GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000090-TA|BGIBMGA000090-PA|IPR002000|Lysosome-associated
membrane glycoprotein (Lamp)/CD68
         (275 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64605-7|AAF98603.1|  296|Caenorhabditis elegans Lamp (lysosome-...    29   2.7  
AC024788-4|ABE73331.1|  305|Caenorhabditis elegans Hypothetical ...    29   2.7  

>U64605-7|AAF98603.1|  296|Caenorhabditis elegans Lamp
           (lysosome-associated membraneprotein) homolog protein 2
           protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 174 VGKSYFCPDETVIELTEEDPSNPTLAHKAKLYLRQMRLQPFMFKRSGEFGPAWHC 228
           VG SY+CP E    + + D  N      A +  +   +Q FM + +  FGP   C
Sbjct: 176 VGHSYYCPSEQKYAINDND--NDKYGPMAYIKFKLTTIQAFM-EDTDSFGPKETC 227


>AC024788-4|ABE73331.1|  305|Caenorhabditis elegans Hypothetical
           protein Y46E12A.4 protein.
          Length = 305

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 15  SLQLDSQASTRRPRVTKYSKTTIAPGGSTESVTERSLVTATYRLQGGGGETCILLT 70
           S++ ++ +ST+RP  T  S ++     ST S++  +L   T + +GGG E  +LLT
Sbjct: 184 SIKSNATSSTKRPLSTTSSNSS---PDSTLSMSSENLGHTTKKGRGGGQEIGVLLT 236


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.132    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,079,302
Number of Sequences: 27539
Number of extensions: 236962
Number of successful extensions: 573
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 2
length of query: 275
length of database: 12,573,161
effective HSP length: 80
effective length of query: 195
effective length of database: 10,370,041
effective search space: 2022157995
effective search space used: 2022157995
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)