GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000090-TA|BGIBMGA000090-PA|IPR002000|Lysosome-associated
membrane glycoprotein (Lamp)/CD68
         (275 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.2  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 49  RSLVTATYRLQGGGGETCILLTVDALLDISYVTKLNERADANTFVPNNANVGGACKD 105
           RS+ T  +   G   E+ + +    L D+S   +L  R   + F+P +  +     D
Sbjct: 42  RSVATQVFNRFGDDTESKLPVKAITLPDLSIPMQLGRRQPFSLFIPAHRKIAARLID 98


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 67  ILLTVDALLDISYVTKLNERADANTFVP 94
           +L   D +LD+ ++  + +  D  T VP
Sbjct: 352 VLDEADRMLDMGFLPSIEKMVDHETMVP 379


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,652
Number of Sequences: 429
Number of extensions: 2544
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 275
length of database: 140,377
effective HSP length: 57
effective length of query: 218
effective length of database: 115,924
effective search space: 25271432
effective search space used: 25271432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)