Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000089-TA|BGIBMGA000089-PA|undefined
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 34 0.38
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 33 0.88
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114... 31 2.0
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 31 2.7
03_02_0899 + 12257831-12257858,12258490-12258561,12259121-122604... 31 2.7
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 31 3.5
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 31 3.5
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139... 31 3.5
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 30 4.7
03_05_0885 - 28505628-28505767,28505892-28505970,28506048-285061... 30 4.7
02_05_1293 - 35520733-35520963,35521696-35521878,35522040-355222... 30 4.7
12_02_0668 + 21688853-21688933,21689043-21689081,21689597-216897... 30 6.2
11_06_0685 - 26272928-26273110,26273186-26273257,26273339-262734... 30 6.2
11_06_0459 + 23830204-23830350,23830419-23830592,23830738-238308... 30 6.2
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 30 6.2
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 30 6.2
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 30 6.2
03_02_0450 + 8600078-8600351,8600944-8601037,8601094-8601241,860... 30 6.2
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 33.9 bits (74), Expect = 0.38
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 416 LDNIYTPSSSRK--NTDSSETLDKDYNASEEDYNYSNNGVANDEAGENPIERSASNKTIQ 473
LDN P S N++S D DYN +D N +++ + + N I + KT++
Sbjct: 18 LDNCSQPISESDDINSESLPAKDDDYNCDSDD-NSASHDMDVSQPHVNEISTNELLKTLK 76
Query: 474 DK-SLLNMLYMDNISLKWSWNTE 495
K S DNI +KWS + E
Sbjct: 77 RKLSKSKRSEDDNIKMKWSESIE 99
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 32.7 bits (71), Expect = 0.88
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 55 QPVSVKHHKAYPRPEDRSDYDITSYDTEYGAVVSNFTSSIYDDNPQLYPNPEFIANSNQG 114
+P + H D +D S D+ Y +SN TS + + P+ + PEF+ NSN
Sbjct: 2866 EPFTTLHRSLQGGKFDHADRLFQSIDSAYKNSLSN-TSDVKELIPEFFYMPEFLENSNSY 2924
Query: 115 --STKLNDNKISDIELP 129
+ + + D+ LP
Sbjct: 2925 HLGVRQDGEPLGDVVLP 2941
>05_01_0166 +
1145829-1145971,1146211-1146235,1147330-1147425,
1147544-1147645,1147767-1147889,1147996-1148622,
1148710-1148883,1148965-1149181,1149312-1149394,
1149478-1149573,1149676-1149724,1149850-1150088,
1150547-1150618,1150694-1150804,1150930-1151282,
1151377-1151464,1151691-1151789,1151860-1151991,
1152119-1152222,1153179-1153215,1153334-1153367,
1153451-1153467
Length = 1006
Score = 31.5 bits (68), Expect = 2.0
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 389 IQELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNY 448
I EL+ HH+ + KN I+ D + S++ K + T D+N SE+D N
Sbjct: 460 INELLLHHLGPDENCIDDRVKNLLIDIFDLL---SNASKPSVPDNT---DFNPSEDDKNK 513
Query: 449 SNNGVANDEAGENPIERSASNKTIQDKSLLN 479
N+G +EA N E + T D ++LN
Sbjct: 514 LNDGSIINEA--NICETPKIHSTCDDNAILN 542
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 31.1 bits (67), Expect = 2.7
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 377 VNKKQAEMLTAKIQELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLD 436
+N+K+ T ++Q+ D +T+ D D+ +T ++ YT + D E +
Sbjct: 199 MNQKKLAQRTKRVQQDEDLDVTSSDDEDFVADEEEVEDTKEDEYTDEDGDSDDDEDEGEE 258
Query: 437 KDYNASEED 445
D + EED
Sbjct: 259 DDDDEGEED 267
>03_02_0899 +
12257831-12257858,12258490-12258561,12259121-12260413,
12260593-12261224
Length = 674
Score = 31.1 bits (67), Expect = 2.7
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 134 ADADLKEHDIIDSVTYLYGYNSCHGDRHEWLILIYVTSAIAVIILAGAVMWQMWSNYAAE 193
AD + + H +DS T L GY G +L++ + A+A I + S A
Sbjct: 24 ADRESQNHLFVDSETPLMGYKIFEGSLVLLSLLLFTSLAVADIASEKQALLAFAS---AV 80
Query: 194 FRMKSKLYPININLCCCLGV 213
+R + +NI+LC GV
Sbjct: 81 YRGNKLNWDVNISLCSWHGV 100
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 30.7 bits (66), Expect = 3.5
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 377 VNKKQAEMLTAKIQELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLD 436
+N+K+ T ++Q+ D +T+ D D+ +T ++ YT + D E +
Sbjct: 501 MNRKKLAQWTKRVQQDEDLDVTSSDDEDFVADEEEVEDTEEDEYTDEDGDSDDDEDEGDE 560
Query: 437 KDYNASEED 445
D + EED
Sbjct: 561 DDDDEGEED 569
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 30.7 bits (66), Expect = 3.5
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 55 QPVSVKHHKAYPRPEDRSDYDITSYDTEYGAVVSNFTSSIYDDNPQLYPNPEFIANSNQG 114
+P + H D +D S ++ Y +SN TS + + P+ + PEF+ NSN
Sbjct: 2494 EPFTALHRNLQGGKFDHADRLFQSIESTYRNCLSN-TSDVKELIPEFFYMPEFLENSNSY 2552
Query: 115 --STKLNDNKISDIELP 129
K + + ++ LP
Sbjct: 2553 HLGVKQDGEPLGNVGLP 2569
>01_06_1745 -
39609894-39610030,39610127-39610223,39613856-39613996,
39614094-39614272,39615067-39615111,39615802-39615858,
39615935-39616163,39616348-39616418,39619527-39619635
Length = 354
Score = 30.7 bits (66), Expect = 3.5
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 375 KSVNKKQAEMLTAKIQELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSET 434
KS ++ + + +Q+ I ++ K+ + D N E +I S N DSS+
Sbjct: 179 KSKLPAKSATVASAMQKAFVKEIEHYEKSKADDDNN---ERYRDISVVGESTGNEDSSDD 235
Query: 435 LDKDYNASEEDYNYSNNGVANDEAGENPIERSASN 469
D + +S+E+ + G + DE E P + S+
Sbjct: 236 ADYEGKSSDEEETTAKEGESTDEK-ETPAKEGESS 269
>09_04_0247 + 16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 30.3 bits (65), Expect = 4.7
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 418 NIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGENPIERSASNK 470
N Y + SS+T + NAS + +N+ N E +NPIE++ + K
Sbjct: 1273 NSYLKKEESTDDASSKTEETTNNASLQKEEKANDSSKNAENADNPIEKTVAPK 1325
>03_05_0885 -
28505628-28505767,28505892-28505970,28506048-28506163,
28506588-28506654,28507361-28507456,28508729-28508838,
28508983-28509070,28510109-28510183,28510401-28510445,
28510521-28510595,28511392-28511763
Length = 420
Score = 30.3 bits (65), Expect = 4.7
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 97 DNPQLYPNPEFIANSNQGSTKLNDNKISDIELPDDSLADADLKEH--DIIDSVTYLYGYN 154
D+P + E I + N + + + D+ L +A + + DII V YL+ +N
Sbjct: 197 DHPNIVNLIEVIDDPNADKFYMVLEYVEGKMVCDNGLGEATSRNYLRDIISGVMYLHSHN 256
Query: 155 SCHGDRHEWLILIYVTSAIAV 175
HGD +L+ T ++ +
Sbjct: 257 IIHGDIKPDNLLVTSTGSVKI 277
>02_05_1293 -
35520733-35520963,35521696-35521878,35522040-35522255,
35522936-35523022,35523125-35523331,35523426-35523650,
35523743-35523798,35524009-35524115,35524443-35525470
Length = 779
Score = 30.3 bits (65), Expect = 4.7
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 430 DSSETLDKDYNASEEDYNYSNNGVAN-DEAGENPIE-RSASNKTIQDKSLLNM-LYMDNI 486
DSS+ D+D + +++D ++ G ++ +E+G + +E RSA K +L N + +
Sbjct: 236 DSSDEDDEDISTAKKDMRFARFGASSEEESGYDELEARSAIRKKWSSAALRNCDMKKERR 295
Query: 487 SLKWSWNTEGNEL 499
+LK S+ E N+L
Sbjct: 296 ALK-SYEEENNDL 307
>12_02_0668 +
21688853-21688933,21689043-21689081,21689597-21689794,
21690288-21690341,21690772-21690825,21691544-21691597,
21691694-21691765,21691860-21691949,21692132-21692188,
21692449-21692514
Length = 254
Score = 29.9 bits (64), Expect = 6.2
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 374 LKSVNKKQAEMLTAKIQELVDHHITNWPKNDQNGDKNAS---IETLDNIYTPSSSRKNTD 430
L++ KKQ E ++ ++ L T+ N +G++NAS +TL N+ + + + +
Sbjct: 165 LRTTLKKQQEDVSNSLKNLGLQDATDNDGNKGSGEENASEGVSDTLGNLKLDDTPKNHDE 224
Query: 431 SSETLDKDYNASEED 445
SS+ D+ ED
Sbjct: 225 SSDANDEKNETIAED 239
>11_06_0685 -
26272928-26273110,26273186-26273257,26273339-26273425,
26273566-26273655,26273741-26273785,26273872-26274054,
26274333-26274392,26274521-26274703,26274779-26274907,
26275083-26275380,26275454-26275608,26275791-26275929,
26276015-26276096,26276167-26276285,26276367-26276494,
26276640-26276813,26276882-26277028
Length = 757
Score = 29.9 bits (64), Expect = 6.2
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 391 ELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDY--NY 448
E+ +H T +++ K ++ E Y S K + + T+D D S +DY
Sbjct: 435 EMNNHRKTKKERSNMRSTKRSNKEP----YITDSDGKTNEKAITIDDDSEESLDDYFDEE 490
Query: 449 SNNGVANDEAGENPIERSASNK-TIQDKSLL 478
N V + NP +R + + I +KS+L
Sbjct: 491 YNKKVTQESTKTNPSKRRVTRRFKIANKSML 521
>11_06_0459 +
23830204-23830350,23830419-23830592,23830738-23830865,
23830947-23831065,23831136-23831217,23831303-23831441,
23831624-23831778,23831852-23832149,23832325-23832453,
23832529-23832711,23832840-23832899,23832973-23833101,
23833177-23833359,23833446-23833490,23833576-23833665,
23833806-23833892,23833974-23834045,23834120-23834302
Length = 800
Score = 29.9 bits (64), Expect = 6.2
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 391 ELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDY--NY 448
E+ +H T +++ K ++ E Y S K + + T+D D S +DY
Sbjct: 435 EMNNHRKTKKERSNMRSTKRSNKEP----YITDSDGKTNEKAITIDDDSEESLDDYFDEE 490
Query: 449 SNNGVANDEAGENPIERSASNK-TIQDKSLL 478
N V + NP +R + + I +KS+L
Sbjct: 491 YNKKVTQESTKTNPSKRRVTRRFKIANKSML 521
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 29.9 bits (64), Expect = 6.2
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 391 ELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDY--NY 448
E+ +H T +++ K ++ E Y S K + + T+D D S +DY
Sbjct: 435 EMNNHRKTKKERSNMRSTKRSNKEP----YITDSDGKTNEKAITIDDDSEESLDDYFDEE 490
Query: 449 SNNGVANDEAGENPIERSASNK-TIQDKSLL 478
N V + NP +R + + I +KS+L
Sbjct: 491 YNKKVTQESTKTNPSKRRVTRRFKIANKSML 521
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 29.9 bits (64), Expect = 6.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 577 LTRTRTTDSIPLLDPTVQQPNVTPAPADTI 606
LT T+T+D P+ ++P+V P P+D +
Sbjct: 1076 LTETKTSDPAPVGSKEQKEPSVAPCPSDIV 1105
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 29.9 bits (64), Expect = 6.2
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 391 ELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDY--NY 448
E+ +H T +++ K ++ E Y S K + + T+D D S +DY
Sbjct: 614 EMNNHRKTKKERSNMRSTKRSNKEP----YITDSDGKTNEKAITIDDDSEESLDDYFDEE 669
Query: 449 SNNGVANDEAGENPIERSASNK-TIQDKSLL 478
N V + NP +R + + I +KS+L
Sbjct: 670 YNKKVTQESTKTNPSKRRVTRRFKIANKSML 700
>03_02_0450 +
8600078-8600351,8600944-8601037,8601094-8601241,
8602226-8602396,8602779-8602958,8603148-8603177,
8603925-8604707
Length = 559
Score = 29.9 bits (64), Expect = 6.2
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 410 NASIETLDNIYTPS-SSRKNTDSSETLDKDYNASEEDYNYSNNGVA---NDEAGENPIER 465
+AS E DN +K+ + D D N S +D N+ G+ + +A NP+ER
Sbjct: 355 SASSENQDNQNNLDVREQKSQTLKASRDSDVNLSLKD-NFQGPGLEMRRDSDASSNPVER 413
Query: 466 SASNKTIQDKSLLNMLYMDNISLK 489
S ++ K +L D+++ K
Sbjct: 414 VQSISDLEKKGAAELLKDDDLNKK 437
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.133 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,449,471
Number of Sequences: 37544
Number of extensions: 728195
Number of successful extensions: 1952
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1943
Number of HSP's gapped (non-prelim): 32
length of query: 611
length of database: 14,793,348
effective HSP length: 86
effective length of query: 525
effective length of database: 11,564,564
effective search space: 6071396100
effective search space used: 6071396100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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