Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000089-TA|BGIBMGA000089-PA|undefined
         (611 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    29   0.11 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.34 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   1.4  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    25   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   2.4  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    24   3.2  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    24   3.2  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    24   3.2  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   5.5  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   5.5  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   5.5  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   5.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   5.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   7.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   7.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   7.3  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   7.3  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 0.11
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 423 SSSRKNTDSSETLDKDYNA-SEEDYNYSNNGVANDEAGENPIERSASNKTIQDKSLLNML 481
           S SR+   +S   +++Y    E     S +    + + E  I  S SNKTI + +  N  
Sbjct: 273 SRSREREQNSYKNEREYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNN 332

Query: 482 YMDNISLKWSWNTEGNELKTYLNL 505
             +N    ++ N   N  K Y N+
Sbjct: 333 NYNNNYNNYNNNNYNNYKKLYYNI 356


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 0.34
 Identities = 16/74 (21%), Positives = 31/74 (41%)

Query: 396 HITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVAN 455
           HI   P++++  +  A    L+     S++   T  +   +   N +  + N +NN  AN
Sbjct: 196 HIDWQPEDEECTEATAGAVVLETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGAN 255

Query: 456 DEAGENPIERSASN 469
           D    N    + +N
Sbjct: 256 DNGNGNGASNNNNN 269



 Score = 23.8 bits (49), Expect = 4.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 410 NASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVAND 456
           +  I+  D++     +    DSS+T+D D + S+     S N   +D
Sbjct: 320 STDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSD 366


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 16/79 (20%), Positives = 33/79 (41%)

Query: 378 NKKQAEMLTAKIQELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDK 437
           N     +L A + +L+ +       N   G++NA  +  DN    + +  N ++++    
Sbjct: 399 NDVNFRILGANVDDLMRNTRCGRYHNQNAGNQNADNQNADNQNANNQNADNQNANKQNGN 458

Query: 438 DYNASEEDYNYSNNGVAND 456
             N + ++ N  N    ND
Sbjct: 459 RQNDNRQNDNKQNGNRQND 477



 Score = 23.8 bits (49), Expect = 4.2
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 399 NWPKNDQNGD-KNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVAND 456
           N   ++QN D +NA+ +  DN      +    + +   D   N + ++ N  N    ND
Sbjct: 429 NQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQND 487


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 374 LKSVNKKQAEMLTAKIQELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSE 433
           L++  KK  E +   +  + +  + NW K  +  +  ++ + +D      +    TD S+
Sbjct: 44  LQTHMKKVREQMAGILSRIPEQGVVNWNKIPEGANTTSTTKIIDGHVVTINETTYTDGSD 103


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 365 INTGIVILGLKSVNKKQAEMLTAKI 389
           ++TGI+I  L +V  K + +L AK+
Sbjct: 46  VHTGILIKALLTVQAKDSNVLAAKV 70


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 379 KKQAEMLTAKIQELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSE 433
           KK  E +   +  + +  + NW K  +  +  ++ + +D      +    TD S+
Sbjct: 97  KKVREQMAGILSRIPEQGVVNWNKIPEGANTTSTTKIIDGHVVTINETTYTDGSD 151


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 379 KKQAEMLTAKIQELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSE 433
           KK  E +   +  + +  + NW K  +  +  ++ + +D      +    TD S+
Sbjct: 97  KKVREQMAGILSRIPEQGVVNWNKIPEGANTTSTTKIIDGHVVTINETTYTDGSD 151


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 379 KKQAEMLTAKIQELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSE 433
           KK  E +   +  + +  + NW K  +  +  ++ + +D      +    TD S+
Sbjct: 97  KKVREQMAGILSRIPEQGVVNWNKIPEGANTTSTTKIIDGHVVAINETTYTDGSD 151


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 44  FKEQKSSYRPYQPVSVKHHKAYPRPEDRSDYDITSYD----------TEYGAVVSNFTSS 93
           F E+K+S + Y     +  K+Y    +  +Y  TS +          ++   ++S+ +++
Sbjct: 29  FLEEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSRDRKERERSKEPKIISSLSNN 88

Query: 94  IYDDNPQLYPNPEFIANSNQGSTKLNDNKISDIELP 129
               N   Y N  +  N+ +     N N I  I +P
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIP 124


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 44  FKEQKSSYRPYQPVSVKHHKAYPRPEDRSDYDITSYD----------TEYGAVVSNFTSS 93
           F E+K+S + Y     +  K+Y    +  +Y  TS +          ++   ++S+ +++
Sbjct: 29  FLEEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSRDRKERERSKEPKIISSLSNN 88

Query: 94  IYDDNPQLYPNPEFIANSNQGSTKLNDNKISDIELP 129
               N   Y N  +  N+ +     N N I  I +P
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIP 124


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 44  FKEQKSSYRPYQPVSVKHHKAYPRPEDRSDYDITSYD----------TEYGAVVSNFTSS 93
           F E+K+S + Y     +  K+Y    +  +Y  TS +          ++   ++S+ +++
Sbjct: 29  FLEEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSRDRKERERSKEPKIISSLSNN 88

Query: 94  IYDDNPQLYPNPEFIANSNQGSTKLNDNKISDIELP 129
               N   Y N  +  N+ +     N N I  I +P
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIP 124


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 44  FKEQKSSYRPYQPVSVKHHKAYPRPEDRSDYDITSYD----------TEYGAVVSNFTSS 93
           F E+K+S + Y     +  K+Y    +  +Y  TS +          ++   ++S+ +++
Sbjct: 29  FLEEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSRDRKERERSKEPKIISSLSNN 88

Query: 94  IYDDNPQLYPNPEFIANSNQGSTKLNDNKISDIELP 129
               N   Y N  +  N+ +     N N I  I +P
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIP 124


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 18  FAQTHYALQQNKTVYNVRRLSAGNGFFKEQKSSYRPYQPVSVKHHKAYPRPEDRSDYDIT 77
           FAQ  YA++ N+T  N    S         KS  +      V + K   R +        
Sbjct: 536 FAQNLYAMKMNETYIN----SGNKISLATSKSFIKANSQTEVSNSKKLDRLDSLRGSTTD 591

Query: 78  SYDTEYGAVVSNFTSSIYDDNPQLYPN 104
           S   +    +SN   +++      YPN
Sbjct: 592 SQTEDNFGPLSNVRFAVFALGSSAYPN 618


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 260 CTCDTLLPLKYNYLLAYGVPAVVVMSTDTKLAMAERW 296
           C      PLK ++   YGVP +  +  DT+  +   W
Sbjct: 192 CVGSAYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVW 228


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 139 KEHDIIDSVTYLYGYNS 155
           KEH II S++  Y YN+
Sbjct: 77  KEHKIISSLSNNYNYNN 93


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 139 KEHDIIDSVTYLYGYNS 155
           KEH II S++  Y YN+
Sbjct: 77  KEHKIISSLSNNYNYNN 93


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 139 KEHDIIDSVTYLYGYNS 155
           KEH II S++  Y YN+
Sbjct: 77  KEHKIISSLSNNYNYNN 93


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,358
Number of Sequences: 429
Number of extensions: 8636
Number of successful extensions: 37
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 19
length of query: 611
length of database: 140,377
effective HSP length: 62
effective length of query: 549
effective length of database: 113,779
effective search space: 62464671
effective search space used: 62464671
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)