Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000089-TA|BGIBMGA000089-PA|undefined
(611 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g05500.1 68414.m00561 C2 domain-containing protein similar to... 36 0.078
At1g11480.1 68414.m01319 eukaryotic translation initiation facto... 36 0.10
At2g33850.1 68415.m04155 expressed protein contains 1 transmembr... 35 0.18
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 33 0.55
At3g57180.1 68416.m06366 expressed protein 33 0.73
At2g16090.1 68415.m01845 zinc finger protein-related contains si... 33 0.73
At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1) c... 32 1.3
At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1) c... 32 1.3
At3g28910.1 68416.m03608 myb family transcription factor (MYB30)... 32 1.3
At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family... 31 1.7
At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family... 31 1.7
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 31 3.0
At4g17250.1 68417.m02594 expressed protein 31 3.0
At3g58020.1 68416.m06466 DNAJ heat shock N-terminal domain-conta... 31 3.0
At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /... 30 3.9
At1g75190.1 68414.m08735 expressed protein 30 3.9
At3g18810.1 68416.m02389 protein kinase family protein contains ... 30 5.2
At5g47580.1 68418.m05873 expressed protein strong similarity to ... 29 6.8
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro... 29 6.8
At5g55820.1 68418.m06956 expressed protein 29 9.0
At4g33630.2 68417.m04778 expressed protein 29 9.0
At4g33630.1 68417.m04777 expressed protein 29 9.0
At4g04350.1 68417.m00622 leucyl-tRNA synthetase, putative / leuc... 29 9.0
At3g50370.1 68416.m05508 expressed protein 29 9.0
At2g03470.2 68415.m00306 myb family transcription factor / ELM2 ... 29 9.0
At2g03470.1 68415.m00305 myb family transcription factor / ELM2 ... 29 9.0
At2g03260.1 68415.m00279 EXS family protein / ERD1/XPR1/SYG1 fam... 29 9.0
At1g79880.3 68414.m09332 La domain-containing protein contains P... 29 9.0
At1g79880.2 68414.m09331 La domain-containing protein contains P... 29 9.0
At1g79880.1 68414.m09333 La domain-containing protein contains P... 29 9.0
At1g67040.1 68414.m07624 expressed protein ; expression supporte... 29 9.0
At1g04810.1 68414.m00477 26S proteasome regulatory subunit, puta... 29 9.0
>At1g05500.1 68414.m00561 C2 domain-containing protein similar to
Ca2+-dependent lipid-binding protein (CLB1) GI:2789434
from [Lycopersicon esculentum]
Length = 528
Score = 35.9 bits (79), Expect = 0.078
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 353 MGFMVPAMILILINTGIVILGLKSVNKKQAEMLTAKIQELVDHHITN-WPKNDQNGDK-- 409
MGF+V +I +L+ I+I +K N + L +++ ++HH+T WP D+ +
Sbjct: 1 MGFIVGVVIGLLVGIAIIIGFVKLENSR--SKLRSELLTWLNHHLTKIWPYVDEAASELI 58
Query: 410 NASIETLDNIYTPSSSRKNTDSSETL 435
AS+E + Y P+ T S TL
Sbjct: 59 KASVEPVLEQYRPAIVASLTFSKLTL 84
>At1g11480.1 68414.m01319 eukaryotic translation initiation
factor-related contains weak similarity to
Swiss-Prot:P23588 eukaryotic translation initiation
factor 4B (eIF-4B) [Homo sapiens]
Length = 578
Score = 35.5 bits (78), Expect = 0.10
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 416 LDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGENPIERSASN 469
L+++ P + K +S+ L + NA+++ +N S +G++ DE P ER N
Sbjct: 321 LESVEKPVNDEKLENSASVLIQRENATQKSFNNSKSGLSTDEIPNQPAERPKLN 374
>At2g33850.1 68415.m04155 expressed protein contains 1 transmembrane
domain; similar to Protein E6 (Swiss-Prot:Q01197)
[Gossypium hirsutum]
Length = 267
Score = 34.7 bits (76), Expect = 0.18
Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 386 TAKIQELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEED 445
TA+ QE ++ ++PK + D N +N + +++ D ++ K Y+ +
Sbjct: 111 TAQTQESYKNYKESYPKTTEIYDNNKDTSYYENSNAYGTDKRDNDINDPY-KGYSNKDTS 169
Query: 446 YNYSNNGVANDEAGENPIERSASNKTIQDKSLLNMLYMDNISLKWSWNTEGNELKTYLN 504
Y + N ++ + P R +N ++ + + + YM N + + + N + Y N
Sbjct: 170 YYENPNTYGTEKREKEPAYRGYNN-NVERQGMSDTRYMANGKYYYDLDDDRNHGRFYQN 227
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 33.1 bits (72), Expect = 0.55
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 426 RKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGENPIERSASNKTIQDKSLL 478
+ N + E + +D NA +E N V +EAG+ P++ ASNK+ S L
Sbjct: 552 KSNVEKHENVAEDLNAEKESLVVKENVVDEEEAGKGPLK--ASNKSTGGSSWL 602
>At3g57180.1 68416.m06366 expressed protein
Length = 644
Score = 32.7 bits (71), Expect = 0.73
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 80 DTEYGAVVSNFTSSIYDDN----PQLYPNPEFIANSNQGSTKLNDNKISDIELPDDSLAD 135
D +YG ++ DN P Y + IAN+ +G + +++++ E+ DD +
Sbjct: 90 DEDYGKIICPGCGIFMQDNDPDLPGYYQKRKVIANNLEGDEHVENDELAGFEMVDDDADE 149
Query: 136 ADLKEHDIIDS--VTYLYGYNSCHGDRHEW 163
+ E D +D + G NS EW
Sbjct: 150 EEEGEDDEMDDEIKNAIEGSNSESESGFEW 179
>At2g16090.1 68415.m01845 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 593
Score = 32.7 bits (71), Expect = 0.73
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 435 LDKDYNASEEDYNYSN-----NGVANDEAGENPI-ERSASNKTIQDKSLL 478
+D + + EEDY YS+ NG+ NDE+ P+ RS + K I +SLL
Sbjct: 1 MDDNLSGEEEDYYYSSDQESLNGIDNDESVSIPVSSRSNTVKVITKESLL 50
>At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1)
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH1 (SUVH1) GI:13517742
Length = 670
Score = 31.9 bits (69), Expect = 1.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 73 DYDITSYDTEYGAVVSNFTSSIYDDNPQLYPNPEFIANSNQGSTKLNDNKISDIELPDDS 132
DY + +TE + ++ SS Y DN + NP+ + + QG D + SD +L +
Sbjct: 242 DYLVVKGETEEEPIATSIVSSGYYDNDE--GNPDVLIYTGQGGNADKDKQSSDQKLERGN 299
Query: 133 LA 134
LA
Sbjct: 300 LA 301
>At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1)
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH1 (SUVH1) GI:13517742
Length = 670
Score = 31.9 bits (69), Expect = 1.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 73 DYDITSYDTEYGAVVSNFTSSIYDDNPQLYPNPEFIANSNQGSTKLNDNKISDIELPDDS 132
DY + +TE + ++ SS Y DN + NP+ + + QG D + SD +L +
Sbjct: 242 DYLVVKGETEEEPIATSIVSSGYYDNDE--GNPDVLIYTGQGGNADKDKQSSDQKLERGN 299
Query: 133 LA 134
LA
Sbjct: 300 LA 301
>At3g28910.1 68416.m03608 myb family transcription factor (MYB30)
identical to myb-like protein GB:AJ007289 [Arabidopsis
thaliana] (Plant J. 20 (1), 57-66 (1999))
Length = 323
Score = 31.9 bits (69), Expect = 1.3
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 386 TAKIQELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEED 445
T I +L+ + N PK + D+ AS E + I K+ D E + SE D
Sbjct: 216 TENIAKLLKGWVKNSPKTQNSADQIASTEVKEVI-------KSDDGKECAGAFQSFSEFD 268
Query: 446 YNYSNNGVANDEAGENPIERSASNKT 471
++Y GV+ D + I SN++
Sbjct: 269 HSYQQAGVSPDHETKPDITGCCSNQS 294
>At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family
protein contains Pfam domain PF00730: HhH-GPD
superfamily base excision DNA repair protein
Length = 394
Score = 31.5 bits (68), Expect = 1.7
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 53 PYQPVSVKHHKAYPRPEDRSDYDITSYDTEYGAVVSNFTSSIYDDNPQLYPNPEFIANSN 112
P QP S H P P + +D D S G++VS+ T + PQ+ + N +
Sbjct: 16 PNQPESPNHETPNPIPPETNDDDSASSAGVSGSIVSSTTI----EAPQVTE----LGNVS 67
Query: 113 QGSTK--LNDNKISDIELPDDSLADADLKEHDIIDSVT 148
TK L KI + PDD +D EH++ T
Sbjct: 68 SPPTKIPLRPRKIRKLS-PDDDASDGFNPEHNLSQMTT 104
>At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family
protein contains Pfam domain PF00730: HhH-GPD
superfamily base excision DNA repair protein
Length = 391
Score = 31.5 bits (68), Expect = 1.7
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 53 PYQPVSVKHHKAYPRPEDRSDYDITSYDTEYGAVVSNFTSSIYDDNPQLYPNPEFIANSN 112
P QP S H P P + +D D S G++VS+ T + PQ+ + N +
Sbjct: 16 PNQPESPNHETPNPIPPETNDDDSASSAGVSGSIVSSTTI----EAPQVTE----LGNVS 67
Query: 113 QGSTK--LNDNKISDIELPDDSLADADLKEHDIIDSVT 148
TK L KI + PDD +D EH++ T
Sbjct: 68 SPPTKIPLRPRKIRKLS-PDDDASDGFNPEHNLSQMTT 104
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 30.7 bits (66), Expect = 3.0
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Query: 365 INTGIVILGLKSVNKKQAEMLTAKIQELVDHHITNWPKNDQNGDKNASIETLDNIYTPSS 424
I+ +V LG K + + E K E+ D + KN+ GD + E D I
Sbjct: 57 IDNTVVNLGRKDLRPRIEETKDVK-DEVEDEEGS---KNEGGGDVSTDKENGDEIVEREE 112
Query: 425 SRKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGENPIERSASNKTIQD 474
K + + + + +EE SNNG + E+ SN+ ++
Sbjct: 113 EEKAVEENNEKEAEGTGNEEGNEDSNNGESEKVVDESEGGNEISNEEARE 162
>At4g17250.1 68417.m02594 expressed protein
Length = 416
Score = 30.7 bits (66), Expect = 3.0
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 156 CHGDR-HEW---LILIYVTSAIAVIILAGAVMWQMWSNYAAEFRMKSKL 200
C+GD ++W L+L+ T+A+A+ +A A W N+ FR K L
Sbjct: 263 CNGDSDYKWSTTLVLVSQTAAVAIGTVAPASRWLKAVNFRCPFRNKKSL 311
>At3g58020.1 68416.m06466 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 580
Score = 30.7 bits (66), Expect = 3.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 426 RKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGE 460
RK+ S LD++ EE+Y YS+ GV++ E +
Sbjct: 322 RKSWGSRYRLDEEEEEEEEEYEYSSTGVSDTEPNQ 356
>At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase PG1 [Glycine max] GI:5669846;
contains PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 373
Score = 30.3 bits (65), Expect = 3.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 10 LVVFIQFYFAQTHYALQQNKTVYNVRRLSA-GNGFFKEQKS 49
L VF F Q+H++L + ++NV A G+GF + K+
Sbjct: 14 LTVFHTFQSVQSHFSLYNDNNIFNVLNYGAIGDGFSDDSKA 54
>At1g75190.1 68414.m08735 expressed protein
Length = 131
Score = 30.3 bits (65), Expect = 3.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 426 RKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGENPIERSASNKTIQDKS 476
RKN ++ E K+ + +EDY + DE E I R K ++ S
Sbjct: 35 RKNLENPEDFKKEESEEDEDYEEYEDEEEEDEEAEVVINREKLKKKVRSSS 85
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.9 bits (64), Expect = 5.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 401 PKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGE 460
P+ + N D N DN ++ N D++ +KD N + + N +NN ND G
Sbjct: 67 PQGNNNNDGNNGNNNNDN-NNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNN-GNDNNGN 124
Query: 461 N 461
N
Sbjct: 125 N 125
>At5g47580.1 68418.m05873 expressed protein strong similarity to
unknown protein (pir||E71441)
Length = 748
Score = 29.5 bits (63), Expect = 6.8
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 156 CHGDR-HEW---LILIYVTSAIAVIILAGAVMWQMWSNYAAEFRMK 197
CHGD ++W L+L+ T+ +A+ +A A+ W N+ R K
Sbjct: 264 CHGDSDYKWSTSLVLVCQTTTVAIGTIAPAIRWFTAVNFRCPIRGK 309
>At2g03140.1 68415.m00267 CAAX amino terminal protease family
protein very low similarity to SP|Q40863 Late
embryogenesis abundant protein EMB8 from Picea glauca;
contains Pfam profile PF02517 CAAX amino terminal
protease family protein
Length = 1805
Score = 29.5 bits (63), Expect = 6.8
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 414 ETL-DNIYTPSSSRK-NTDSSETLDKDYNASEEDYNYSNNGVANDEAGENPIERSASNKT 471
ETL D+ TP+S+ TD + + DY + E + N + V + E E+ +E S +
Sbjct: 526 ETLEDSDMTPNSNLSPETDLEKNVKIDYGSDETENNIVSTRVESIEDNESNVEESDRGQV 585
Query: 472 IQ 473
+Q
Sbjct: 586 LQ 587
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 29.1 bits (62), Expect = 9.0
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 402 KNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGEN 461
K++ + D NAS + +N + S+ N SE + EE YN S ++DE E
Sbjct: 1682 KSNSSDDTNASRSSRENDFKVISNPGNM--SEEANMGIEEMEESYNISPYKCSDDEDEEE 1739
Query: 462 PIERSASNK 470
SNK
Sbjct: 1740 DDNDDMSNK 1748
>At4g33630.2 68417.m04778 expressed protein
Length = 684
Score = 29.1 bits (62), Expect = 9.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 119 NDNKISDIELPDDSLADADLKEHDI-IDSVT 148
ND I DI++ DD+ A+ D K DI ++SVT
Sbjct: 367 NDLDIEDIDVEDDTKAEIDEKNADIELESVT 397
>At4g33630.1 68417.m04777 expressed protein
Length = 684
Score = 29.1 bits (62), Expect = 9.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 119 NDNKISDIELPDDSLADADLKEHDI-IDSVT 148
ND I DI++ DD+ A+ D K DI ++SVT
Sbjct: 367 NDLDIEDIDVEDDTKAEIDEKNADIELESVT 397
>At4g04350.1 68417.m00622 leucyl-tRNA synthetase, putative /
leucine--tRNA ligase, putative similar to SP|P36430
Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA
ligase) (LeuRS) {Bacillus subtilis}; contains Pfam
profile PF00133: tRNA synthetases class I (I, L, M and
V)
Length = 973
Score = 29.1 bits (62), Expect = 9.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 64 AYPRPEDRSDYDITSYDTEYGAVVSNFTSSIYDDNPQLYPNPEFIANSNQGSTKLNDNKI 123
A P + R + Y+ VV N +S DD Q+YP I NS+ T L+ N++
Sbjct: 426 AVPAHDTRDNEFALKYNIPIKWVVRNEANSS-DDAKQVYPGLGIIENSSTLETGLDINQL 484
Query: 124 SDIE 127
S E
Sbjct: 485 SSKE 488
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 29.1 bits (62), Expect = 9.0
Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 7/127 (5%)
Query: 354 GFMVPAMILILINTGIVILGLKSVNKKQAEMLTAKIQELVDHHI--TNWPKNDQNGDKNA 411
G+ V + N+G+ G V++ + ++ V+ + +NWP +D+N + N
Sbjct: 1316 GYQVQTDTSAVRNSGLRSSGTAEVSRVDSGGNRRYRRQRVEFRVRESNWPSSDENRNGNG 1375
Query: 412 SIETLDNIYTPSSSRKNTDSSETLDKD---YNASEEDYNYSN--NGVANDEAGENPIERS 466
+T I + N + LD NA ++ + + N + D +NP+ +
Sbjct: 1376 RAQTSTKIGSRKYVVSNKSQKQALDSSASGLNAMQKTVSGGSFENRLGKDAVVKNPLSPN 1435
Query: 467 ASNKTIQ 473
+ ++
Sbjct: 1436 SGQANLK 1442
>At2g03470.2 68415.m00306 myb family transcription factor / ELM2
domain-containing protein contains Pfam profile: PF00249
Myb-like DNA-binding domain; contains Pfam profile:
PF01448 ELM2 domain
Length = 449
Score = 29.1 bits (62), Expect = 9.0
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 393 VDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNG 452
V+++I N K+ D N + + ++ + N D E ++D ++S + + +
Sbjct: 298 VEYNIFNSTKSLDEEDNNGNRSSYEDNEEEEETSSNDDDEEEEEEDDSSSNDAHCVDTDK 357
Query: 453 VANDEAGE--NPIERSASNKTIQDKSLL 478
+ D GE N + S + +QD +L+
Sbjct: 358 ASRDGFGEEVNVEDDSCMSFELQDSNLI 385
>At2g03470.1 68415.m00305 myb family transcription factor / ELM2
domain-containing protein contains Pfam profile: PF00249
Myb-like DNA-binding domain; contains Pfam profile:
PF01448 ELM2 domain
Length = 450
Score = 29.1 bits (62), Expect = 9.0
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 393 VDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNG 452
V+++I N K+ D N + + ++ + N D E ++D ++S + + +
Sbjct: 299 VEYNIFNSTKSLDEEDNNGNRSSYEDNEEEEETSSNDDDEEEEEEDDSSSNDAHCVDTDK 358
Query: 453 VANDEAGE--NPIERSASNKTIQDKSLL 478
+ D GE N + S + +QD +L+
Sbjct: 359 ASRDGFGEEVNVEDDSCMSFELQDSNLI 386
>At2g03260.1 68415.m00279 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 807
Score = 29.1 bits (62), Expect = 9.0
Identities = 22/103 (21%), Positives = 43/103 (41%)
Query: 403 NDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGENP 462
N G + A IE LD+I ++ + + + + +E +N N ++
Sbjct: 247 NTMRGARPAPIEVLDHIKINNTKATPRSTIKGVLNSSSQNEIIFNRQNLNEVEEKLKFAF 306
Query: 463 IERSASNKTIQDKSLLNMLYMDNISLKWSWNTEGNELKTYLNL 505
+E + ++ S LN+L I K+ T N K+Y+ +
Sbjct: 307 VEFYQKLRLLKSYSFLNVLAFSKILKKYDKITSRNASKSYMKM 349
>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 357
Score = 29.1 bits (62), Expect = 9.0
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 375 KSVNKKQAEMLTAKIQELVDHHITNWPKNDQNGDKN-ASI--ETLDNIYTPSSSRKNTDS 431
K NK++ L KI+E D + +NGD + AS+ + D + P + N+ S
Sbjct: 177 KVTNKEKPSALKNKIKEKEDKETGIADREKENGDNSCASLCKDNTDQLVVPPWNNSNSVS 236
Query: 432 SETL 435
SE L
Sbjct: 237 SEVL 240
>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 345
Score = 29.1 bits (62), Expect = 9.0
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 375 KSVNKKQAEMLTAKIQELVDHHITNWPKNDQNGDKN-ASI--ETLDNIYTPSSSRKNTDS 431
K NK++ L KI+E D + +NGD + AS+ + D + P + N+ S
Sbjct: 177 KVTNKEKPSALKNKIKEKEDKETGIADREKENGDNSCASLCKDNTDQLVVPPWNNSNSVS 236
Query: 432 SETL 435
SE L
Sbjct: 237 SEVL 240
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 29.1 bits (62), Expect = 9.0
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 375 KSVNKKQAEMLTAKIQELVDHHITNWPKNDQNGDKN-ASI--ETLDNIYTPSSSRKNTDS 431
K NK++ L KI+E D + +NGD + AS+ + D + P + N+ S
Sbjct: 231 KVTNKEKPSALKNKIKEKEDKETGIADREKENGDNSCASLCKDNTDQLVVPPWNNSNSVS 290
Query: 432 SETL 435
SE L
Sbjct: 291 SEVL 294
>At1g67040.1 68414.m07624 expressed protein ; expression supported
by MPSS
Length = 826
Score = 29.1 bits (62), Expect = 9.0
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 350 GMVMGFMVPAMILILINTGIVILGLKSVNKKQAEMLTAKIQEL 392
G+ GF+V AMI L T I LK + KQ E++ I+E+
Sbjct: 737 GLTGGFLVDAMIEHLEETNISCGLLKPLTAKQDELIRGVIEEV 779
>At1g04810.1 68414.m00477 26S proteasome regulatory subunit,
putative contains similarity to 26S proteasome
regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
norvegicus]
Length = 1001
Score = 29.1 bits (62), Expect = 9.0
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 90 FTSSIYDDNPQLYPNPEFIANSNQGSTKLNDNKISDIELPDDSLADADLKEHDIIDSV 147
F S+ D P P + + ST N+N D+++ D++ + + E D +D+V
Sbjct: 267 FLMSVRDRLPAPKTRPVEAIQAVETSTAQNENTAGDVQMADETPSQTIVHETDPVDAV 324
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.133 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,157
Number of Sequences: 28952
Number of extensions: 630680
Number of successful extensions: 1910
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1895
Number of HSP's gapped (non-prelim): 39
length of query: 611
length of database: 12,070,560
effective HSP length: 85
effective length of query: 526
effective length of database: 9,609,640
effective search space: 5054670640
effective search space used: 5054670640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -