Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000089-TA|BGIBMGA000089-PA|undefined
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 33 0.15
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 32 0.27
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 31 0.62
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 29 1.4
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 1.4
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 1.4
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 29 1.4
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 29 1.9
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 2.5
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 29 2.5
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 28 3.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 28 3.3
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 28 3.3
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 28 3.3
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 28 3.3
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe... 28 3.3
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 28 3.3
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 28 4.3
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 28 4.3
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 28 4.3
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 27 5.7
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 27 5.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 5.7
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 5.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 7.6
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 27 7.6
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 403 NDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGENP 462
+D GD+ +S L + P SS N+ S E D DY E+ + + G N
Sbjct: 10 DDDGGDRESSPVMLSQSFDPMSSSSNSSSEENSDDDY---EKTISSKKRHPRPNSKGVN- 65
Query: 463 IERSASNKTIQD 474
++RS N +++
Sbjct: 66 VKRSRRNAIVEE 77
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 31.9 bits (69), Expect = 0.27
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 543 MYMYLTGTI-CTTLPIVQQKTPVPPCCEDVVIEPFLTRTRTTDSIPLLDPTVQQPNVTPA 601
M +T T+ TTLP TPV ++E +T T T + P+++ + VT
Sbjct: 251 MEAMITPTVETTTLPTAAMTTPVEETTTTPMVETMITPTVVTTTTPMVETMITPTVVTTT 310
Query: 602 P 602
P
Sbjct: 311 P 311
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 30.7 bits (66), Expect = 0.62
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 401 PKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGE 460
P +D+ D S+E + + + + E+ + +ASEED YS + V ++E+GE
Sbjct: 935 PSDDEGDD---SVEEVSEYEASDADPSDEEEEESEEYSEDASEED-GYSESEVEDEESGE 990
Query: 461 --NPIERSA 467
+ +ER A
Sbjct: 991 DWDELERKA 999
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 29.5 bits (63), Expect = 1.4
Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 8/117 (6%)
Query: 47 QKSSYRPYQPVSVKHHKAYPRPEDRSDYDITSYDTEYGAVVSNFTSSIYDDNPQLYPNPE 106
QKSS + + VK YP+PE S YD+ S+ S +Y N +
Sbjct: 380 QKSSAKEEESDKVKGESVYPKPESES-YDVEMNGKSLED--SDSLSELYLTNEE-KKMAS 435
Query: 107 FIANSNQGSTKLNDNKISDIELPDDSLADADLKEHDIIDSVTY---LYGYNSCHGDR 160
I +S KL ++K+S + D + +E D TY LY C R
Sbjct: 436 IIKDSVNVQIKLIESKLSHFDYLDQHIR-LKSQELDAFAQATYREKLYMKRECQNAR 491
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 425 SRKNTDSSETLDK-DYNASEEDYNYSNNGVANDEAGENPIERSASNKTIQDKSLLNMLYM 483
S+ D SE LD D +SE+D ND+A + +R K + + L +ML
Sbjct: 156 SKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKK--DRKTRKKEEKARKLASMLES 213
Query: 484 DN 485
+N
Sbjct: 214 EN 215
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 377 VNKKQAEMLTAKIQELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDS 431
V ++ + +KIQ+ + I N K N E + N+ P+SSRK T S
Sbjct: 422 VRGQKLHLEISKIQKKYQNQIENMKKGSHVTKSNQYSEMIGNLPYPTSSRKRTRS 476
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 412 SIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGENPIERSASNKT 471
S + +NIY P +RKN +++ +D + +D++ + + ++ EN A N+
Sbjct: 20 SSASFENIYDP--ARKNESTNDVIDNHTDTEIDDHDNDHENLDSNNNNEN---NEAFNEK 74
Query: 472 IQDKSLL 478
+K LL
Sbjct: 75 AAEKKLL 81
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 29.1 bits (62), Expect = 1.9
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 427 KNTDSS-ETLDKDYNASEEDYNYSNNGVANDEAGENPIERSASNKTIQDKSLLNMLYMD- 484
KN D S ETL KD ++ +D+ SN +A + A E + + K L N YMD
Sbjct: 105 KNADPSVETLQKDRVSNVDDHLSSNPLMAEEYAP----EIFEYIRKLDLKCLPNPKYMDQ 160
Query: 485 NISLKWSWNTEGNE--LKTYLNLCLILEP-FFAIN 516
L W NE ++ + N CL+ E + A+N
Sbjct: 161 QKELTWKMREILNEWLVEIHSNFCLMPETLYLAVN 195
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/73 (20%), Positives = 36/73 (49%)
Query: 402 KNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGEN 461
+++ + + N S + + + SSS + SS + D + +S +D + S+N +++ +
Sbjct: 226 ESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSS 285
Query: 462 PIERSASNKTIQD 474
S S + +D
Sbjct: 286 DSSDSESESSSED 298
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 403 NDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGENP 462
N + + ++S ++ D+ + SSS + +S + D D ++S ED N + + + E
Sbjct: 275 NSSDSEDDSSSDSSDS-ESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQS 333
Query: 463 IERSASNK 470
S S++
Sbjct: 334 STNSTSSE 341
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/70 (21%), Positives = 35/70 (50%)
Query: 402 KNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGEN 461
+++ + + + S + + + SSS N SS + D + +S ED + S++ ++ +
Sbjct: 208 ESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSS 267
Query: 462 PIERSASNKT 471
S+SN +
Sbjct: 268 KDSDSSSNSS 277
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 402 KNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGEN 461
+++ + + + S + + + SSS N SS + D + +S ED + S++ ++D E+
Sbjct: 154 ESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSS--SSDSESES 211
Query: 462 PIERSASNKT 471
E S S+ +
Sbjct: 212 SSEGSDSSSS 221
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 394 DHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGV 453
+H N P + + N+S L + +++ S K+ S++ + S G
Sbjct: 843 EHLSKNLPTLNTSSSSNSSQTDLLVPHGKGETKETEMQSPIESKEGLLSKDTHIESPQGT 902
Query: 454 A----NDEAGENPIERSASNKTIQDKSL 477
+ N+E G+NP+E + S +++ D ++
Sbjct: 903 SLEKENEEEGKNPVESNCSEESLDDHNI 930
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 267 PLKYNYLLAYGVPAV-VVMSTDTKLAMAERWRQRRD 301
PLK YL Y P + V++ T TK A+ + R+RRD
Sbjct: 132 PLKIGYLSTYIAPLIFVLLITLTKEAVDDLKRRRRD 167
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 412 SIETLDNIYTPSSSRKNTDSSE-TLDKDYNASEEDYNYSNNGVANDEAGENPIERSASNK 470
+++ ++ P S+++N +E T D D +++E V ND+ GE +++S S +
Sbjct: 916 ALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQKTADV-NDDVGEEEVKQSVSEQ 974
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 423 SSSRKNTDSSETLDKDYNASEEDYN-YSNNGVANDEAGENPI-ERSASNKT 471
SS + T +E D+D +EE+++ S++G A++ P+ E SAS T
Sbjct: 475 SSQKVATQQTEGSDQDGEEAEEEWHGISDDGKADESESTKPVAEGSASEST 525
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 28.3 bits (60), Expect = 3.3
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 360 MILILINTGIVILGLKSVNKKQAEMLTAKIQELVDHHITNWPKNDQNGDK--NASIETLD 417
++L +I + +L + K+ A IQ L D ++T W + G NAS T+
Sbjct: 18 ILLEVIALDLGVLDNIFIPKRFAASTDVAIQ-LPDRNVTLWSRQAVFGKHFTNASATTVI 76
Query: 418 NIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVAND 456
N+Y PS+ +++ + N ++ Y Y N+ + D
Sbjct: 77 NLYLPSNFQEDMSGC----PNRNDTDASYFYENDIIDYD 111
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/46 (21%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 501 TYLNLCLILEPFFAINWVMGVVAIENATHWSTPTIYLILIVSMYMY 546
T+ N+ L+ F+++ V+G+ +W P ++++I+ +++Y
Sbjct: 388 TFYNISLLTSDFWSL--VIGIHVFGYHVYWLYPIAFVLIILGLFVY 431
>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 143 IIDSVTYLYGYNSC--HGDRHEWLILIYVTSAIAVIILA 179
II+ V+ LYG S + D W +L+YV+S + +I+ +
Sbjct: 40 IINKVSGLYGIVSLFQNSDASPWQVLMYVSSVLMLILFS 78
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 402 KNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVANDE---- 457
KN + + L+++ N S++ + DYN+S+E + SN VA+ +
Sbjct: 194 KNSATANNDEIFYNLESLRREGYLNSNKKQSQSPNGDYNSSDE--SCSNKTVASSQRRGT 251
Query: 458 AGENPIERSASNKT 471
G N + +++N+T
Sbjct: 252 PGSNNVHTASNNET 265
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.9 bits (59), Expect = 4.3
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 402 KNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVANDEAGEN 461
+N+ + + S E DN S+S K+T S E D++ + EE Y+ + G E+
Sbjct: 88 ENEGSSSSSESSEITDNEEVASASSKSTKSEELTDEE-SEDEEVYDPA-RGEGIISTSES 145
Query: 462 PIERSASNKT 471
E A ++T
Sbjct: 146 SDESDAESET 155
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 159 DRHEWLILIYVTSAIAVIILAGAVMWQMWSNYAAEFRMKSKLY 201
D + W IL+ ++A G +W W N A RM ++Y
Sbjct: 726 DTYLWYILVNTVFSVARSFFLGISIWTPWRNIFA--RMPKRIY 766
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 71 RSDYDITSYDTEYGAVVSNFTSSIYDDNPQLYPNPEFIANSNQGS 115
R D +YD ++ + + S Y +P + N F+ NS G+
Sbjct: 127 RGDGRYNAYDPSSDSLANVYNSVPYGSSPYDFSNSSFVGNSGSGT 171
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 30 TVYNVRRLSAGNGFFKEQKSSYRPYQPVSVKHHKAYPRPE-DRSDYDITSYDTEYGAVVS 88
T Y R+ S+G F E +S + SV++ P P S +ITS+D
Sbjct: 318 TSYKTRKRSSGVAFSSETVTSSSKERKRSVENEMLKPHPTIFESPPEITSFDKSNAVEAE 377
Query: 89 NFTSSIYDDNPQL 101
T+ + + +L
Sbjct: 378 ALTAKLKSNEERL 390
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 27.5 bits (58), Expect = 5.7
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 395 HHITNWPKNDQNGDKNASIETLDNIYTPSSSRKNTDSSETLDKDYNASEEDYNYSNNGVA 454
H + + N +G N SI S+ + D + + + +SE+D +N A
Sbjct: 315 HGVMDASGNHHSGSSNQSINA-----DSSAGSEGVDEGTSTEANDESSEDDDEDNNTDEA 369
Query: 455 NDEAGENPIERSASNKTIQDKSLLNMLYMDNISLKWSWNTEG 496
N++A N + S + N++ D S+K N +G
Sbjct: 370 NEDAQSNVSDESPKGEGSSHSD--NVVLSDGNSVK-KMNEDG 408
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 5.7
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 368 GIVILGLKSVNKKQAEMLTAKIQELV-DHHITNWPKNDQNGDKNASIETLDNIYTPSSSR 426
GI+ L L S NKK T+ + L + ++ + K N + N S + +
Sbjct: 154 GILSLQLSSSNKKDKN--TSSVTTLTSEEDVSYFQKKLTNMESNFSAKQSEAYDLSRQLL 211
Query: 427 KNTDSSETLDKDYNASEEDYNYSNNGVANDEAGENPI 463
T+ + +KDY +ED + +A ++A +
Sbjct: 212 TVTEKLDKKEKDYEKIKEDVSSIKASLAEEQASNKSL 248
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 386 TAKIQELVDHHITNWPKNDQNGDKNASIETLDNIYTPSSSRKN-----TDSSETLDKDYN 440
T K L HH+ W + + + YT S++KN T +L+ Y
Sbjct: 523 TEKKLHLEQHHLYGWCLRLTRTEAGC-LRGRSSHYTELSTQKNGVYFTTKRLHSLNNSYM 581
Query: 441 ASEEDYNYSNNGVAND 456
++ Y Y NG+A +
Sbjct: 582 DHQKSYRYHQNGLARE 597
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 83 YGAVVSNFTSSIYDDNPQLYP 103
+ ++NF S IY DNP L P
Sbjct: 452 FSTPITNFFSKIYKDNPSLNP 472
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 401 PKNDQNGDKNASIETLDNIYTPSSSRKNTD-SSETLDKDYNASEEDYNYSNN 451
P N Q + P + +N + SS ++Y E DYN+SNN
Sbjct: 434 PSNTQQSESTYEYSARQLPKPPVQAWQNENLSSNNKPQEYVGVENDYNFSNN 485
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.133 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,392
Number of Sequences: 5004
Number of extensions: 129921
Number of successful extensions: 498
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 47
length of query: 611
length of database: 2,362,478
effective HSP length: 77
effective length of query: 534
effective length of database: 1,977,170
effective search space: 1055808780
effective search space used: 1055808780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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