Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000088-TA|BGIBMGA000088-PA|IPR009617|Protein of unknown
function DUF1226
         (208 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-7|CAB60526.1|  373|Caenorhabditis elegans Hypothetical ...    37   0.012
AF068718-7|AAM45356.1|  274|Caenorhabditis elegans Hypothetical ...    33   0.20 
L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with...    27   7.4  
AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AY204171-1|AAO39175.1|  424|Caenorhabditis elegans nuclear recep...    27   9.7  
AF273802-1|AAG15151.1|  353|Caenorhabditis elegans nuclear recep...    27   9.7  
AF273801-1|AAG15150.1|  141|Caenorhabditis elegans nuclear recep...    27   9.7  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    27   9.7  
AF022978-1|AAG24179.2|  424|Caenorhabditis elegans Nuclear hormo...    27   9.7  

>AL132860-7|CAB60526.1|  373|Caenorhabditis elegans Hypothetical
           protein Y56A3A.9 protein.
          Length = 373

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 74  FDFDLSWKTHIDVICKRAELGLNILKSLTGVKWGADPKVLKTIYIATIRSHFDYGCIS 131
           FD  L  + H   I KR +  LN +K L G  WG++ +++ T + A  +    Y C S
Sbjct: 78  FDSMLCMREHHAQIKKRLQSQLNQMKGLAGTTWGSNKELMLTTFKAITKPGATYACQS 135


>AF068718-7|AAM45356.1|  274|Caenorhabditis elegans Hypothetical
           protein R01B10.6 protein.
          Length = 274

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 14/69 (20%), Positives = 31/69 (44%)

Query: 3   PLLMSDVVEEKQTIQVDLFTEFDDDPNQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRY 62
           P        +  T+ + +  ++ +  + P T     +Q ++  +   +L + A F  +R+
Sbjct: 139 PFYFLGFFHDYSTLAIPMSADYLEGIDSPSTKLVFVVQDKFANIEEAELIVTARFGLIRH 198

Query: 63  LMYNWPKFS 71
           L+Y WP  S
Sbjct: 199 LLYYWPTTS 207


>L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           b protein.
          Length = 926

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 85  DVICKRAELGLNILKSLTGVKWGADPKVLKTIYIATI-RSHFDYGCISTNLFF 136
           +++ + A  G+  L++ T   +GADP+V+  ++   + R HF         FF
Sbjct: 871 NIVAQCAGTGVKTLQAETDWGYGADPQVISRLFSELVARGHFKLELALLQRFF 923


>AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical
           protein ZC581.9 protein.
          Length = 827

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 88  CKRAELGLNILKSLTGVKWGADPKVLKTIYIATIRSHFDYGCIS 131
           C   ELG N+  S+  V    D +V  T+ + ++  HFD  C+S
Sbjct: 308 CISNELGPNLKDSMAKVL-SLDVEVRPTVQLLSLIKHFDDPCLS 350


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/37 (32%), Positives = 24/37 (64%)

Query: 38  ELQSRYVQVYGGQLHIEAHFTGLRYLMYNWPKFSALF 74
           +LQ+R ++VYG  + +E+   G +   +N P +S++F
Sbjct: 142 KLQARKLKVYGPPIVLESIEDGKQLPQWNHPVYSSVF 178


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 129 CISTNLFFITLVFALSWYHLQEGLPEFIKSKLGTT 163
           CI    FF+ L  A++ +H QE +  +++S +  T
Sbjct: 91  CILILAFFLELAAAVTLFHKQEHIKHYVESSMYDT 125


>AY204171-1|AAO39175.1|  424|Caenorhabditis elegans nuclear receptor
           NHR-55 protein.
          Length = 424

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 17  QVDLFTEFD-DDPNQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRY 62
           Q+  F + D DD N+ V  A +ELQ   V++         H+ G RY
Sbjct: 299 QLRFFADSDLDDRNEQVIQAMMELQPTDVELSYMMCQACLHYAGKRY 345


>AF273802-1|AAG15151.1|  353|Caenorhabditis elegans nuclear receptor
           NHR-55 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 17  QVDLFTEFD-DDPNQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRY 62
           Q+  F + D DD N+ V  A +ELQ   V++         H+ G RY
Sbjct: 228 QLRFFADSDLDDRNEQVIQAMMELQPTDVELSYMMCQACLHYAGKRY 274


>AF273801-1|AAG15150.1|  141|Caenorhabditis elegans nuclear
          receptor NHR-55 protein.
          Length = 141

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 17 QVDLFTEFD-DDPNQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRY 62
          Q+  F + D DD N+ V  A +ELQ   V++         H+ G RY
Sbjct: 16 QLRFFADSDLDDRNEQVIQAMMELQPTDVELSYMMCQACLHYAGKRY 62


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 26  DDPNQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRYLMYN 66
           D+   P   + VE    +V+V+GG +H E     +R ++++
Sbjct: 93  DEKRIPAAISEVECSCPHVKVHGGIIHCEPMMYNMRVMLFD 133


>AF022978-1|AAG24179.2|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 55 protein.
          Length = 424

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 17  QVDLFTEFD-DDPNQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRY 62
           Q+  F + D DD N+ V  A +ELQ   V++         H+ G RY
Sbjct: 299 QLRFFADSDLDDRNEQVIQAMMELQPTDVELSYMMCQACLHYAGKRY 345


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,097,852
Number of Sequences: 27539
Number of extensions: 203590
Number of successful extensions: 359
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 11
length of query: 208
length of database: 12,573,161
effective HSP length: 78
effective length of query: 130
effective length of database: 10,425,119
effective search space: 1355265470
effective search space used: 1355265470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)