GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000088-TA|BGIBMGA000088-PA|IPR009617|Protein of unknown
function DUF1226
         (208 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    26   3.5  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    25   6.1  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   6.1  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   8.1  

>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 29  NQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRYLMYNWPKFSALFDF-DLSWKTHI 84
           N P   A V++ S+ ++ Y   L   +   G+R+ MY   K SA   F  L W T I
Sbjct: 161 NTPA-QAIVKIYSKDIEFYEATLAFASKLHGMRWFMYT-HKVSAFLVFTSLFWFTGI 215


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 43 YVQVYGGQLHIEA-HFTGLRYLMYNWPKFSALFDFD 77
          Y  VYG  L        GL ++ ++WP+   L  FD
Sbjct: 52 YYNVYGPSLSAGTPKEEGLHFIQHDWPQSKVLSGFD 87


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 109 DPKVLKTIYI-ATIRSHFDYGCISTNLFFITLVFALSWYHLQEGLPEFIKSKLGTTPDKD 167
           + K ++ +YI A++ S   Y  +   + + TL F   W  L E   +F  SK  T P KD
Sbjct: 348 EEKSIRLLYILASLLSFPGYAIVEEKVSWRTLEF---WTTLIE---DFSMSKAATDPSKD 401

Query: 168 E 168
           E
Sbjct: 402 E 402


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)

Query: 112 VLKTIYIATIRSH--FDYG-CI--STNLFFITLVFALSWYHL 148
           VL+  Y++   S   +D G C   S   +FIT  F LSW++L
Sbjct: 380 VLEAFYVSAANSSQLYDQGKCYLASAVFYFITGKFLLSWFNL 421


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 959,196
Number of Sequences: 5004
Number of extensions: 38546
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 4
length of query: 208
length of database: 2,362,478
effective HSP length: 70
effective length of query: 138
effective length of database: 2,012,198
effective search space: 277683324
effective search space used: 277683324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)