GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000088-TA|BGIBMGA000088-PA|IPR009617|Protein of unknown
function DUF1226
         (208 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0381 + 21657795-21658313                                         31   0.89 
01_01_0853 + 6658237-6658531,6658683-6658823,6658969-6659238,665...    29   2.7  

>01_05_0381 + 21657795-21658313
          Length = 172

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 17  QVDLFTEFDDDPNQPVTDAYVELQSRYVQV 46
           Q+DLF  FD  P +PVT    E + R+ ++
Sbjct: 74  QIDLFMSFDPPPLEPVTGVSKEEEDRFAKI 103


>01_01_0853 +
           6658237-6658531,6658683-6658823,6658969-6659238,
           6659324-6659463,6659563-6659709,6660739-6661320
          Length = 524

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 69  KFSALFDFDLSWKTHI-DVICKRAELGLNILKSLTGVKWGADPKVLKTIYIATIR 122
           +  A ++   ++K+ I D   + AEL   + K L  +KW     +LK ++++T R
Sbjct: 329 EIQAPYNLRCAFKSEILDATKQAAELLRGLAKDLNNMKWSLQTSLLKHVHVSTER 383


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,795,189
Number of Sequences: 37544
Number of extensions: 223455
Number of successful extensions: 306
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 2
length of query: 208
length of database: 14,793,348
effective HSP length: 79
effective length of query: 129
effective length of database: 11,827,372
effective search space: 1525730988
effective search space used: 1525730988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)