GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000088-TA|BGIBMGA000088-PA|IPR009617|Protein of unknown
function DUF1226
         (208 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    33   0.008
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    26   0.94 
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    24   2.9  
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    23   6.7  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   8.8  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   8.8  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 32.7 bits (71), Expect = 0.008
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 73  LFDFDLSWKTHIDVICKRAELGLNILKSLTGVKWGADPKVLKTIYIATIRSHFDYGCI 130
           L D  L++K HID +  R    L ++   T      +P  +K +Y   +RS  +Y C+
Sbjct: 850 LLDSSLNFKQHIDDVVARGNQLLGVVIRTTNEF--RNPMCIKAVYNCIVRSVLEYSCV 905


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 25.8 bits (54), Expect = 0.94
 Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 4/45 (8%)

Query: 78  LSWKTHIDVICKRAELGLNILKSLTGV-KWGADPKVLKTIYIATI 121
           LSW+ H++++  +A   L ++++L G+ +  + P+V K   +A +
Sbjct: 751 LSWRPHVEMVADKA---LRVVRALRGIMRNHSGPQVSKRKLLAAV 792


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 73  LFDFDLSWKTHIDVICKRAELGLNILKSLT 102
           + D  L +K+H++  CK+    +N L + T
Sbjct: 772 VIDDRLKFKSHLEEACKKVMKAINALAAFT 801


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 107 GADPKVLKTIYIATIRSHFDY 127
           G +PK+L+T    T+R   DY
Sbjct: 714 GPEPKILETYSKLTMRDAMDY 734


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 5    LMSDVVEEKQTIQVD-LFTEFDDDPNQPVTDAY 36
            L+   V    T  +D L+ E+DDDPN     A+
Sbjct: 1989 LVDSGVAPNSTNFIDTLYGEYDDDPNLRYRSAF 2021


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 8    DVVEEKQTIQVDLFTEFDDDPNQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRYLMYNW 67
            D  +  Q + VD  +    +PN  V D Y   +S+Y Q+   ++  E  F  L+      
Sbjct: 2068 DEKKHAQHVLVDYKSHQILNPNWYVRDLYFFKRSQYPQLRLVEMKPEESFNALQ-RQELC 2126

Query: 68   PKFSALFDFDLSWK--THIDVICKR 90
             KF  +    L+W    ++D++ +R
Sbjct: 2127 KKFVEIGKVHLTWAILKNVDMVVQR 2151


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,649
Number of Sequences: 2123
Number of extensions: 7419
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 6
length of query: 208
length of database: 516,269
effective HSP length: 61
effective length of query: 147
effective length of database: 386,766
effective search space: 56854602
effective search space used: 56854602
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)