BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000088-TA|BGIBMGA000088-PA|IPR009617|Protein of unknown function DUF1226 (208 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL132860-7|CAB60526.1| 373|Caenorhabditis elegans Hypothetical ... 37 0.012 AF068718-7|AAM45356.1| 274|Caenorhabditis elegans Hypothetical ... 33 0.20 L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 27 7.4 AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical ... 27 7.4 Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr... 27 9.7 Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 27 9.7 AY204171-1|AAO39175.1| 424|Caenorhabditis elegans nuclear recep... 27 9.7 AF273802-1|AAG15151.1| 353|Caenorhabditis elegans nuclear recep... 27 9.7 AF273801-1|AAG15150.1| 141|Caenorhabditis elegans nuclear recep... 27 9.7 AF036692-8|AAB88329.1| 162|Caenorhabditis elegans Hypothetical ... 27 9.7 AF022978-1|AAG24179.2| 424|Caenorhabditis elegans Nuclear hormo... 27 9.7 >AL132860-7|CAB60526.1| 373|Caenorhabditis elegans Hypothetical protein Y56A3A.9 protein. Length = 373 Score = 36.7 bits (81), Expect = 0.012 Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 74 FDFDLSWKTHIDVICKRAELGLNILKSLTGVKWGADPKVLKTIYIATIRSHFDYGCIS 131 FD L + H I KR + LN +K L G WG++ +++ T + A + Y C S Sbjct: 78 FDSMLCMREHHAQIKKRLQSQLNQMKGLAGTTWGSNKELMLTTFKAITKPGATYACQS 135 >AF068718-7|AAM45356.1| 274|Caenorhabditis elegans Hypothetical protein R01B10.6 protein. Length = 274 Score = 32.7 bits (71), Expect = 0.20 Identities = 14/69 (20%), Positives = 31/69 (44%) Query: 3 PLLMSDVVEEKQTIQVDLFTEFDDDPNQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRY 62 P + T+ + + ++ + + P T +Q ++ + +L + A F +R+ Sbjct: 139 PFYFLGFFHDYSTLAIPMSADYLEGIDSPSTKLVFVVQDKFANIEEAELIVTARFGLIRH 198 Query: 63 LMYNWPKFS 71 L+Y WP S Sbjct: 199 LLYYWPTTS 207 >L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with ran (nuclear import/export) function protein 2, isoform b protein. Length = 926 Score = 27.5 bits (58), Expect = 7.4 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 85 DVICKRAELGLNILKSLTGVKWGADPKVLKTIYIATI-RSHFDYGCISTNLFF 136 +++ + A G+ L++ T +GADP+V+ ++ + R HF FF Sbjct: 871 NIVAQCAGTGVKTLQAETDWGYGADPQVISRLFSELVARGHFKLELALLQRFF 923 >AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical protein ZC581.9 protein. Length = 827 Score = 27.5 bits (58), Expect = 7.4 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 88 CKRAELGLNILKSLTGVKWGADPKVLKTIYIATIRSHFDYGCIS 131 C ELG N+ S+ V D +V T+ + ++ HFD C+S Sbjct: 308 CISNELGPNLKDSMAKVL-SLDVEVRPTVQLLSLIKHFDDPCLS 350 >Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical protein F37D6.1 protein. Length = 1227 Score = 27.1 bits (57), Expect = 9.7 Identities = 12/37 (32%), Positives = 24/37 (64%) Query: 38 ELQSRYVQVYGGQLHIEAHFTGLRYLMYNWPKFSALF 74 +LQ+R ++VYG + +E+ G + +N P +S++F Sbjct: 142 KLQARKLKVYGPPIVLESIEDGKQLPQWNHPVYSSVF 178 >Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical protein F33C8.3 protein. Length = 282 Score = 27.1 bits (57), Expect = 9.7 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 129 CISTNLFFITLVFALSWYHLQEGLPEFIKSKLGTT 163 CI FF+ L A++ +H QE + +++S + T Sbjct: 91 CILILAFFLELAAAVTLFHKQEHIKHYVESSMYDT 125 >AY204171-1|AAO39175.1| 424|Caenorhabditis elegans nuclear receptor NHR-55 protein. Length = 424 Score = 27.1 bits (57), Expect = 9.7 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 17 QVDLFTEFD-DDPNQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRY 62 Q+ F + D DD N+ V A +ELQ V++ H+ G RY Sbjct: 299 QLRFFADSDLDDRNEQVIQAMMELQPTDVELSYMMCQACLHYAGKRY 345 >AF273802-1|AAG15151.1| 353|Caenorhabditis elegans nuclear receptor NHR-55 protein. Length = 353 Score = 27.1 bits (57), Expect = 9.7 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 17 QVDLFTEFD-DDPNQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRY 62 Q+ F + D DD N+ V A +ELQ V++ H+ G RY Sbjct: 228 QLRFFADSDLDDRNEQVIQAMMELQPTDVELSYMMCQACLHYAGKRY 274 >AF273801-1|AAG15150.1| 141|Caenorhabditis elegans nuclear receptor NHR-55 protein. Length = 141 Score = 27.1 bits (57), Expect = 9.7 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 17 QVDLFTEFD-DDPNQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRY 62 Q+ F + D DD N+ V A +ELQ V++ H+ G RY Sbjct: 16 QLRFFADSDLDDRNEQVIQAMMELQPTDVELSYMMCQACLHYAGKRY 62 >AF036692-8|AAB88329.1| 162|Caenorhabditis elegans Hypothetical protein C44B12.6 protein. Length = 162 Score = 27.1 bits (57), Expect = 9.7 Identities = 11/41 (26%), Positives = 22/41 (53%) Query: 26 DDPNQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRYLMYN 66 D+ P + VE +V+V+GG +H E +R ++++ Sbjct: 93 DEKRIPAAISEVECSCPHVKVHGGIIHCEPMMYNMRVMLFD 133 >AF022978-1|AAG24179.2| 424|Caenorhabditis elegans Nuclear hormone receptor familyprotein 55 protein. Length = 424 Score = 27.1 bits (57), Expect = 9.7 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 17 QVDLFTEFD-DDPNQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRY 62 Q+ F + D DD N+ V A +ELQ V++ H+ G RY Sbjct: 299 QLRFFADSDLDDRNEQVIQAMMELQPTDVELSYMMCQACLHYAGKRY 345 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.321 0.138 0.419 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,097,852 Number of Sequences: 27539 Number of extensions: 203590 Number of successful extensions: 359 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 354 Number of HSP's gapped (non-prelim): 11 length of query: 208 length of database: 12,573,161 effective HSP length: 78 effective length of query: 130 effective length of database: 10,425,119 effective search space: 1355265470 effective search space used: 1355265470 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 57 (27.1 bits)
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