GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000088-TA|BGIBMGA000088-PA|IPR009617|Protein of unknown
function DUF1226
         (208 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17770.1 68417.m02652 glycosyl transferase family 20 protein ...    29   2.3  
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP...    28   4.0  
At1g12000.1 68414.m01386 pyrophosphate--fructose-6-phosphate 1-p...    28   4.0  

>At4g17770.1 68417.m02652 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein contains Pfam
           profile: PF02358 trehalose-phosphatase
          Length = 862

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 20  LFTEFDDD--PNQPVTDAYVELQSRYVQVYGGQLHIEAHFTGLRYLMYNWPKFSALFDFD 77
           + +E DDD   N   +DA   +    + + G QL I++H      L ++W   S L    
Sbjct: 36  VLSELDDDNNSNSVCSDAPSSVTQDRIIIVGNQLPIKSHRNSAGKLSFSWDNDSLLLQLK 95

Query: 78  LSWKTHIDVI 87
              +  ++V+
Sbjct: 96  DGMREDMEVV 105


>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
           epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1367

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 78  LSWKTHIDVICKRAELGLNILKSLTGVKWGADPKVLKTIYIATI 121
           L  KTH+ +I +  E G ++   +   K+G  P+ L T+YIA +
Sbjct: 86  LKTKTHLHIILEYVENG-SLANIIKPNKFGPFPESLVTVYIAQV 128


>At1g12000.1 68414.m01386 pyrophosphate--fructose-6-phosphate
           1-phosphotransferase beta subunit, putative /
           pyrophosphate-dependent 6-phosphofructose-1-kinase,
           putative strong similarity to SP|Q41141
           Pyrophosphate--fructose 6-phosphate 1-phosphotransferase
           beta subunit (EC 2.7.1.90) (PFP) ((PPI-PFK) {Ricinus
           communis}; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 566

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/13 (84%), Positives = 12/13 (92%)

Query: 84  IDVICKRAELGLN 96
           +DVICKRAELG N
Sbjct: 315 VDVICKRAELGYN 327


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,919,835
Number of Sequences: 28952
Number of extensions: 196289
Number of successful extensions: 309
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 4
length of query: 208
length of database: 12,070,560
effective HSP length: 78
effective length of query: 130
effective length of database: 9,812,304
effective search space: 1275599520
effective search space used: 1275599520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)