Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000087-TA|BGIBMGA000087-PA|IPR007087|Zinc finger,
C2H2-type
         (213 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    33   0.042
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    32   0.073
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    31   0.17 
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    30   0.22 
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    25   6.3  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    25   8.4  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   8.4  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   8.4  

>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 32.7 bits (71), Expect = 0.042
 Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 10  DLDNVRLVRMEDVQPSREGRIEIFETCIIDHIEYDNECVIGDDQTNVGGIVSIQTDETEQ 69
           DLD+++ + M+D QPS E  +   +  I++     +  ++    T++    S +  ++  
Sbjct: 118 DLDDLKKLSMKDSQPSLEKPVSYVDEPILEQWALSDLQILPPSSTDLLSPDSQKLSKSSS 177

Query: 70  SASEFIVPEILEVPVENEKLDVIPHTPDRWPTLEILPGGVIKPADKADNQNSRKSRVTLN 129
              +F  P +   P  N  L   P +  R+    +    ++ P    DN++ +  +  + 
Sbjct: 178 DLPQFDYPSLNSSPTFNSNL---PISSSRFEKTSLSDSKLVSPEPLDDNKDIQFIKKPIY 234

Query: 130 SEMIYACAKCSQTFK 144
           +       K + TFK
Sbjct: 235 TRTSEPRPKPAGTFK 249


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 31.9 bits (69), Expect = 0.073
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 114 DKADNQNSRKSRVTLNSEMIYAC--AKCSQTFKFLYCLVKHVRWHENEQKVKKSNIADLI 171
           +K++N +S K++    S+  Y C  A C++ F   Y L  H+  H N +  + S      
Sbjct: 550 NKSENSSSSKAKSESKSQGNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSF 609

Query: 172 LSKNRKKQDKQANLNTG 188
             ++ K++ +Q  L+TG
Sbjct: 610 ARQHDKRRHEQ--LHTG 624


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 91  VIPHTPDRWPTLEILPGGVIKP 112
           V+ H  DRW T+ I+PG  I+P
Sbjct: 278 VVEHLDDRWLTIPIIPGECIRP 299


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 134 YACAKCSQTFKFLYCLVKHVRWHENEQKVKKSNIADL 170
           Y C  C++ F  L  L +H+R H NE+    S I  L
Sbjct: 70  YVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGL 106


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 97  DRWPTLEILPGGVIKPADKADNQNSRK 123
           DRW     LPGG     DK+D Q + +
Sbjct: 72  DRWSGHMALPGGTRSLTDKSDIQTAHR 98


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 84  VENEKLDVI-PHTPDRWPTLEILPGGVIKPADKADNQNSRKSRVT 127
           ++ +K  +I P   D+     I+ G V K   KAD++N+   R+T
Sbjct: 244 IQTDKKHIIRPFIEDKSHVESIMTGKVTKVPVKADSKNTLSRRMT 288


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 15  RLVRMEDVQPS--REGRIEIFETCIIDHIEYDNECVIGDD--QTNVGGIVSIQTDETEQS 70
           +++R  D++ S   E RI ++ +C+   ++Y +E V GD   Q  V  ++     +  Q+
Sbjct: 122 QVIRNCDIEGSYISEKRILVWCSCLCKALQYLHENVAGDSPKQPEVNDLIMFDEPQVPQN 181

Query: 71  AS 72
            S
Sbjct: 182 TS 183


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 23  QPSREGRI-EIFETC-IIDHIEYDNECVIGDDQT---NVGGIV-SIQTDETEQSASEFIV 76
           Q +R  R+ EIF    ++    Y + C +G +     NV GI  ++ +  T    S  ++
Sbjct: 127 QQNRVIRVSEIFSKAGVLTRPSYSSVCQLGPEGPSVENVQGIFQALSSLYTVIVPSSILM 186

Query: 77  PEILEVPVENEKL 89
           P ++EVP++  ++
Sbjct: 187 PNVIEVPIDGNEV 199


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 911,433
Number of Sequences: 5004
Number of extensions: 38008
Number of successful extensions: 83
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 9
length of query: 213
length of database: 2,362,478
effective HSP length: 70
effective length of query: 143
effective length of database: 2,012,198
effective search space: 287744314
effective search space used: 287744314
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)