Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000087-TA|BGIBMGA000087-PA|IPR007087|Zinc finger,
C2H2-type
         (213 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.54 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               25   0.71 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   1.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.8  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   6.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 131 EMIYACAKCSQTFKFLYCLVKHVRWHENEQKV 162
           E +Y C  C +TF     +  H++ H +   V
Sbjct: 257 EKVYKCTLCHETFGSKKTMELHIKTHSDSSVV 288



 Score = 24.6 bits (51), Expect = 0.71
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 127 TLNSEMIYACAKCSQTFKFLYCLVKHVRWHENEQKVK 163
           T   E  Y C  CS++F     L  H R H  E+  K
Sbjct: 113 THTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYK 149



 Score = 24.2 bits (50), Expect = 0.94
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 134 YACAKCSQTFKFLYCLVKHVRWHENEQ 160
           Y C  C +TF     L +H R H  E+
Sbjct: 92  YRCNICGKTFAVPARLTRHYRTHTGEK 118



 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 131 EMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           E  + C  CS+TF     LV H+R H  E+
Sbjct: 173 ERPHKCTVCSKTFIQSGQLVIHMRTHTGEK 202



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 131 EMIYACAKCSQTFKFLYCLVKHVRWHENEQKVK 163
           E  Y C  C + F+    L +H+R H  E+  K
Sbjct: 145 ERPYKCDVCERAFEHSGKLHRHMRIHTGERPHK 177



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/34 (32%), Positives = 13/34 (38%)

Query: 127 TLNSEMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           T   E  Y C  C + F     L  H R H  E+
Sbjct: 197 THTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEK 230


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 138 KCSQTFKFLYCLVKHVRWHENEQKVKKSN 166
           KC    KF  C++ +V++H  +  +  +N
Sbjct: 110 KCLTAQKFSRCVIDYVKFHITQYMISNAN 138


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 123 KSRVTLNS-EMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           K+ + L++ E  Y C+ C + F  +  L +H+R H  E+
Sbjct: 26  KTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGER 64



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 127 TLNSEMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           T   E  + C +C + F   + L  H+R H  E+
Sbjct: 3   THTGEKPFECPECHKRFTRDHHLKTHMRLHTGEK 36


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 118 NQNSRKSRVTLNSEMI-YACAKCSQTFKFLYCLVKHVR 154
           N++   S +  +S +  Y CA C+   K+ + L  H+R
Sbjct: 28  NKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLHLR 65



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 134 YACAKCSQTFKFLYCLVKHVRWHENEQKVKKSN 166
           + C KCS +      L  H++ H N  + + +N
Sbjct: 17  FKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCAN 49


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 4/29 (13%)

Query: 92   IPHTPDRWPTLEILPGGVIKPADKADNQN 120
            +P  P+R PT+++ P     P+D+  N +
Sbjct: 1365 VPERPERVPTVDLSP----SPSDRGRNDD 1389


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 152 HVR--WHENEQKVKKSNIADLILSKNRKKQDKQANL 185
           H+R   H N   +K S I     S++RKK   + NL
Sbjct: 159 HIRRTLHMNRTSLKTSKIVSYPKSRSRKKGGLKDNL 194


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 134 YACAKCSQTFKFLYCLVKHVRWH 156
           ++C  C + +  L  L  H+R H
Sbjct: 17  FSCKYCEKVYVSLGALKMHIRTH 39


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,413
Number of Sequences: 429
Number of extensions: 2158
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 213
length of database: 140,377
effective HSP length: 55
effective length of query: 158
effective length of database: 116,782
effective search space: 18451556
effective search space used: 18451556
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)