Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000087-TA|BGIBMGA000087-PA|IPR007087|Zinc finger,
C2H2-type
(213 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein ... 31 0.59
At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containi... 31 0.59
At3g23790.1 68416.m02990 AMP-binding protein, putative similar t... 30 1.0
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 30 1.4
At5g16360.1 68418.m01912 NC domain-containing protein contains P... 29 2.4
At5g54360.1 68418.m06769 zinc finger (C2H2 type) family protein-... 29 3.1
At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein ... 29 3.1
At5g35430.1 68418.m04213 expressed protein 28 5.5
At3g46070.1 68416.m04985 zinc finger (C2H2 type) family protein ... 28 5.5
At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR... 27 7.2
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 7.2
At5g02110.1 68418.m00132 cyclin family protein low similarity to... 27 7.2
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ... 27 7.2
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR... 27 7.2
At5g63880.1 68418.m08020 SNF7 family protein contains Pfam domai... 27 9.5
At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR... 27 9.5
At4g15810.1 68417.m02406 chloroplast outer membrane protein, put... 27 9.5
>At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 353
Score = 31.1 bits (67), Expect = 0.59
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 129 NSEMIYACAKCSQTFKFLYCLVKHVRWHENEQKVKKSNIADLILSKNRKKQDK 181
N +++ C +C + F + CL H++ +E+ ++S + + RK+ +
Sbjct: 73 NKKILIRCKECGKGFLYEKCLFNHLQVTHSEESTRRSLFCRFSIVQRRKRSKR 125
>At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containing
protein low similarity to post-transcriptional control
of chloroplast gene expression CRP1 [Zea mays]
GI:3289002; contains Pfam profile PF01535: PPR repeat
Length = 855
Score = 31.1 bits (67), Expect = 0.59
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 45 NECVIGDDQTNVGGIVSIQTD--ETEQSASEFIVPEILEV-PVENEKLDVIPHTPDRWPT 101
N C +D++ V I+T+ +T + AS + PVE K V+P T + +
Sbjct: 30 NSCTCAEDESGVSKRQQIRTEVVQTGKRASNLAAGLAGSILPVEAGKPLVVPKTVEHFTR 89
Query: 102 LEILPGGVIKPA--DKADNQN 120
+LP V PA KAD+ N
Sbjct: 90 PSLLPQHVSSPALPGKADSVN 110
>At3g23790.1 68416.m02990 AMP-binding protein, putative similar to
AMP-binding protein GB:CAA96521 from [Brassica napus]
(Plant Mol. Biol. (1997) 33 (5), 911-922); contains Pfam
AMP-binding enzyme domain PF00501; identical to cDNA
acyl-CoA synthetase-like protein GI:20799732
Length = 722
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 6 LEGEDLDNVRLVRMEDVQPSREGRIEIFETCIIDHIEYDNECVIGDDQTNVGGIVSIQTD 65
LEG D + L E+V+P +EI E + ++ VIG DQ +G IV +
Sbjct: 584 LEGRAKDTIVLSTGENVEP-----LEIEEAAMRSNL-IQQIVVIGQDQRRLGAIVIPNKE 637
Query: 66 ETEQSASEFIVPEILEV 82
E +A + I P EV
Sbjct: 638 AAEGAAKQKISPVDSEV 654
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 104 ILPGGVIKPADKADNQNSRKSRVTLNSEMIYACAKCS 140
IL G+ + DK D++N+RKS V + + KCS
Sbjct: 837 ILTAGLNQGGDKQDSRNNRKSTVGKDDHTMQVIEKCS 873
>At5g16360.1 68418.m01912 NC domain-containing protein contains
Pfam domain, PF04970: NC domain
Length = 283
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 31 EIFETCIIDHIEYDNECVIGDDQTNVGGIVS 61
+I + I +H D +C+ DQ+N+GG++S
Sbjct: 59 KIIDISIPNHGRRDKKCIDCGDQSNLGGVIS 89
>At5g54360.1 68418.m06769 zinc finger (C2H2 type) family
protein-related contains Prosite:PS00028: Zinc finger,
C2H2 type, domain.
Length = 270
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 129 NSEMIYACAKCSQTFKFLYCLVKHVRWHENEQKVKK 164
++++ + C C + FK + L H++ H+ E++++K
Sbjct: 76 DNKISHTCRFCKRNFKSCFALGGHMKCHKKERELEK 111
>At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 284
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 102 LEILPGGVIKPADKADNQNSRKSRVTLNSE----MIYACAKCSQTFKFLYCLVKHVRWHE 157
L +L G + P+ D +NSRK ++SE +Y C C++TF L H H+
Sbjct: 79 LIMLARGTVLPSP--DLKNSRKIHQKISSENSSFYVYECKTCNRTFSSFQALGGHRASHK 136
>At5g35430.1 68418.m04213 expressed protein
Length = 786
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/43 (25%), Positives = 26/43 (60%)
Query: 30 IEIFETCIIDHIEYDNECVIGDDQTNVGGIVSIQTDETEQSAS 72
+ + C+ + I NE + D ++++G I+S+ +ET++ +S
Sbjct: 510 LPLARVCLSNGIYLLNESLSNDSKSDLGSILSVGMNETKEGSS 552
>At3g46070.1 68416.m04985 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 170
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 114 DKADNQNSRKSRVTLNSEMIYACAKCSQTFKFLYCLVKHVRWHENE-QKVKKSNI 167
DK+ + +K T + + C C F L H+R H NE ++ K SN+
Sbjct: 66 DKSLPGSPKKKPKTTTTTTAHTCPICGLEFPMGQALGGHMRKHRNEKEREKASNV 120
>At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1205
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 152 HVRWHENEQKVKKSNIADLILSKN 175
H W + EQ +K+S IA ++ SKN
Sbjct: 52 HSLWPDLEQAIKESRIAVVVFSKN 75
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 48 VIGDDQTNVGGIVSIQTDETEQSASEFIVPEILEVPVENEKLDVIPHTPD 97
V+G D V I + T Q + V E+ V E+LDV+P TPD
Sbjct: 249 VLGMDSEKVKAIQERIDEFTSQMSQLLQVERDTELEVTQEELDVVP-TPD 297
>At5g02110.1 68418.m00132 cyclin family protein low similarity to
cyclin D3.1 from [Lycopersicon esculentum] GI:5679622,
[Nicotiana tabacum] GI:4160300; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 341
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 123 KSRVTLNSEMIYACAKCSQTFKFLYCLVKHVRW 155
+SR+ L+ E +++ A C F ++ C + W
Sbjct: 89 RSRLNLSYETVFSAANCFDRFVYMTCCDEWTNW 121
>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
(ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
type
Length = 178
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 134 YACAKCSQTFKFLYCLVKHVRWHENEQKVKKSNIADLILS 173
+ C+ CSQ+F L H+R H + V+ S I+ +I S
Sbjct: 94 HKCSICSQSFGTGQALGGHMRRHRSSMTVEPSFISPMIPS 133
>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 776
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 152 HVRWHENEQKVKKSNIADLILSKN 175
H W + EQ +K+S IA ++ SKN
Sbjct: 52 HSLWPDLEQAIKESRIAVVVFSKN 75
>At5g63880.1 68418.m08020 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 219
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 66 ETEQSASEFIVPEILEVPV----ENEKLDVIPHTPDRWPTLEILPGGVIKPADKA 116
E + S+ IV E+ EVP E+EKLD +P P + P + I PA+ A
Sbjct: 157 EFDNLESQLIVDEMPEVPTKESEESEKLD-LPDVPTKTP---VASNAEITPAESA 207
>At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1145
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 152 HVRWHENEQKVKKSNIADLILSKN 175
H W + EQ +K S IA +I SKN
Sbjct: 52 HSLWPDLEQAIKDSRIAVVIFSKN 75
>At4g15810.1 68417.m02406 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 898
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 4 SALEGEDLDNVRLVRMEDVQPSREGRIEIFETCIIDHIEYDNECVI 49
+ LE LD VR+ R+ + +G IDH++YD E V+
Sbjct: 64 TVLEDVVLDGVRVDRLLGEELGGDGSEFQVGVGFIDHLQYDEEAVL 109
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.131 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,629,518
Number of Sequences: 28952
Number of extensions: 192465
Number of successful extensions: 437
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 18
length of query: 213
length of database: 12,070,560
effective HSP length: 78
effective length of query: 135
effective length of database: 9,812,304
effective search space: 1324661040
effective search space used: 1324661040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)
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