GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000087-TA|BGIBMGA000087-PA|IPR007087|Zinc finger,
C2H2-type
         (213 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    27   0.084
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    27   0.084
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    27   0.15 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    25   0.45 
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    23   1.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.8  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   1.8  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   1.8  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    23   2.4  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.3  

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 27.5 bits (58), Expect = 0.084
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 127 TLNSEMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           T + E  Y C  C+++F     L  HVR H  E+
Sbjct: 15  THSGEKPYRCIDCNKSFSQAANLTAHVRTHSGEK 48



 Score = 27.5 bits (58), Expect = 0.084
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 127 TLNSEMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           T + E  Y C  C + F     L KH+R H  E+
Sbjct: 71  THSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 104



 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 127 TLNSEMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           T + E  + C  C + F     +  H+R H  E+
Sbjct: 43  THSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGER 76


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 0.084
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 127 TLNSEMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           T + E  Y C  C+++F     L  HVR H  E+
Sbjct: 271 THSGEKPYRCIDCNKSFSQAANLTAHVRTHSGEK 304



 Score = 27.5 bits (58), Expect = 0.084
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 127 TLNSEMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           T + E  Y C  C + F     L KH+R H  E+
Sbjct: 327 THSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 360



 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 127 TLNSEMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           T + E  + C  C + F     +  H+R H  E+
Sbjct: 299 THSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGER 332


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 127 TLNSEMIYACAKCSQTFKFLYCLVKHVRWHE-NEQKVKKSNIADLILSKNRKKQDKQANL 185
           T   E  +AC  C++ F     L KHV+ H  N +K    + +D   S+   + D   N+
Sbjct: 368 THTGEKRFACPICNKRFMRSDHLAKHVKTHNGNGKKGSSDSCSD---SEENSQSDITNNV 424

Query: 186 NT 187
           N+
Sbjct: 425 NS 426



 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 126 VTLNSEMIYAC--AKCSQTFKFLYCLVKHVRWHENEQ 160
           V L  + I++C    C + +     L  H+RWH  E+
Sbjct: 307 VHLRKKNIHSCHIPGCGKVYGKTSHLKAHLRWHTGER 343


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 14/41 (34%), Positives = 16/41 (39%)

Query: 120 NSRKSRVTLNSEMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           N R+       E  Y C  CS  F     L  HV  H NE+
Sbjct: 205 NLRRHLRVHTGERPYGCEHCSMKFSDSNQLKAHVLIHTNEK 245



 Score = 24.6 bits (51), Expect = 0.59
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 134 YACAKCSQTFKFLYCLVKHVRWHENEQ 160
           + C  C+++F + + L  H R H  E+
Sbjct: 135 FTCEVCNRSFGYKHVLQNHERTHTGEK 161



 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 123 KSRVTLNS-EMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           K+ + L++ E  Y C  C + F  +  L +H+R H  E+
Sbjct: 179 KTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRVHTGER 217



 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 127 TLNSEMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           T   E  + C +C + F   + L  H+R H  E+
Sbjct: 156 THTGEKPFECQECHKRFTRDHHLKTHMRLHTGER 189


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 123 KSRVTLNS-EMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           K+ + L++ E  Y C  C + F  +  L +H+R H  E+
Sbjct: 26  KTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRVHTGER 64



 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 127 TLNSEMIYACAKCSQTFKFLYCLVKHVRWHENEQ 160
           T   E  + C +C + F   + L  H+R H  E+
Sbjct: 3   THTGEKPFECQECHKRFTRDHHLKTHMRLHTGER 36


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 118 NQNSRKSRVTLNSEMI-YACAKCSQTFKFLYCLVKHVR 154
           N++   S +  +S +  Y+C  CS   K+ + L  H+R
Sbjct: 270 NKSMLNSHMKSHSNVYRYSCRDCSYATKYCHSLKIHLR 307



 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 124 SRVTLNSEMIYACAKCSQTFKFLYCLVKHVRWH 156
           S+V +  +    C KC    ++ + L  H+R H
Sbjct: 221 SKVHIREDKRLTCPKCPFITEYKHHLEYHLRNH 253


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 118 NQNSRKSRVTLNSEMI-YACAKCSQTFKFLYCLVKHVR 154
           N++   S +  +S +  Y+C  CS   K+ + L  H+R
Sbjct: 28  NKSMLNSHMKSHSNVYRYSCRDCSYATKYCHSLKIHLR 65


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 134 YACAKCSQTFKFLYCLVKHVRWHENEQ 160
           + C  C++ F   Y L+ H R H +E+
Sbjct: 80  FICKYCNRQFTKSYNLLIHERTHTDER 106


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 136 CAKCSQTFKFLYCLVKHVRWHENEQKVKK 164
           CAKCS+  K +   V H   H  +Q  K+
Sbjct: 70  CAKCSEKQKEMTKKVIHFLSHNKQQMWKE 98


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 132 MIYACAKCSQTFKFLYCLVKHVRWHENE 159
           +++ C  C + F     L +H+R H  E
Sbjct: 193 VLHQCPVCHKKFTNALVLQQHIRLHTGE 220


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 161 KVKKSNIADLILSKNRKKQDKQANLN 186
           K+ K+N   L LSK ++   +++NLN
Sbjct: 301 KLSKNNDQCLDLSKTKETNLEKSNLN 326


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 161 KVKKSNIADLILSKNRKKQDKQANLN 186
           K+ K+N   L LSK ++   +++NLN
Sbjct: 193 KLSKNNDQCLDLSKTKETNLEKSNLN 218


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,096
Number of Sequences: 317
Number of extensions: 1832
Number of successful extensions: 22
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of query: 213
length of database: 114,650
effective HSP length: 54
effective length of query: 159
effective length of database: 97,532
effective search space: 15507588
effective search space used: 15507588
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)