Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000087-TA|BGIBMGA000087-PA|IPR007087|Zinc finger,
C2H2-type
(213 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 33 0.17
07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392 32 0.40
03_03_0050 - 14086954-14087079,14087152-14088045 32 0.40
05_01_0534 - 4601844-4602297,4602689-4602847,4602947-4603514,460... 29 2.8
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 29 2.8
11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570... 29 3.7
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 28 4.9
09_06_0330 - 22376394-22376505,22376609-22376744,22376835-223769... 28 6.5
01_07_0105 - 41104655-41104851,41105818-41107150 28 6.5
>03_05_0226 - 22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 33.1 bits (72), Expect = 0.17
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
Query: 63 QTDETEQSASEFIVPEILEVPVENEKLD-----VIPHTPDRWPTLEILPGGVIKPADKAD 117
Q D+ E+ + + + +E +K+D VI T + EIL I +
Sbjct: 887 QIDKLEKESISMNSEQRTKQQMEIDKIDTTNGEVIEETEEN--NEEILIDPDIAKSKGRP 944
Query: 118 NQNSRKSRVTLNSEMIYACAKCSQT-FKFLYCLVKHVRWHENEQKVKKS-NIADLILSKN 175
+Q + R L S+ +Y C+ C +T F C +KH+ + +K++K+ N A +
Sbjct: 945 SQRYKSFREELQSKEVYHCSYCQRTDHTFPTCPLKHIEFDLPRKKIRKTKNTAQKNAEEE 1004
Query: 176 RKKQDKQAN 184
+ K+ N
Sbjct: 1005 QTDGSKKTN 1013
>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
Length = 313
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 107 GGVIKPADKADNQNSRKSRVTLNSEMIYACAKCSQTFKFLYCLVKHV 153
G +I+ +K+ NS+ SR + ++ C KCS+ F+ LV+HV
Sbjct: 260 GALIEHCEKSHQSNSQSSRSRVTVDV---CPKCSKAFRDPVLLVEHV 303
>03_03_0050 - 14086954-14087079,14087152-14088045
Length = 339
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 103 EILPGGVIKPADKADNQNSRKSRVTLNSEMIYACAKCSQT-FKFLYCLVKHVRWHENEQK 161
EIL I + +Q + R L S+ +Y C+ C +T F C +KH+ + +K
Sbjct: 229 EILIDPDIAKSKGRPSQRYKSFREELQSKEVYHCSHCQRTDHTFPTCPLKHIEFDLLRKK 288
Query: 162 VKKS 165
++K+
Sbjct: 289 IRKT 292
>05_01_0534 -
4601844-4602297,4602689-4602847,4602947-4603514,
4604853-4605246
Length = 524
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 79 ILEVPVENEKLDVIPHTPDRWPTLEILPGGVI 110
IL+ PV L ++ H PDRW T+ PG +I
Sbjct: 399 ILQSPVPG--LQLLRHRPDRWVTVPGTPGALI 428
>02_05_0702 -
31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 111 KPADKADNQNSRKSRVT-LNSEMIYACAKCSQTFKFLYCLVKHVRWHENEQKVKKSNIAD 169
K + AD+ S+ +R+ + ++ + A C++ + L KH W + E K K N+A+
Sbjct: 150 KIVNLADSSASKGARIQEVEAKFTHLQATCNRITQEKDLLEKHNLWLDEELKEKVKNLAE 209
Query: 170 LILSKNRKKQDKQANLN 186
L + D++A ++
Sbjct: 210 L----RKSNMDEEARMS 222
>11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,
5709679-5709975
Length = 1214
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 68 EQSASEFIVPEILEVPVEN-EKLDVIPHTPDRWPTLEILPGGVIKP-ADKADNQNSRKSR 125
E S SEF+ P + E+ + N KL + P P + G+I A A + ++ S
Sbjct: 1044 EDSVSEFMFPNLCELEISNCPKLQLTPCPPRAKKWTIVRSDGIISSWAGNAPHTSTSCST 1103
Query: 126 VTLNSEMIYACAKCSQTFKFLYCL 149
++S ++ C + ++ L+ L
Sbjct: 1104 PLVSSLVVQQCDSPLREWRLLHHL 1127
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 139 CSQTFKFLYCLVKHVRWHENEQKVKKS 165
C TFK+L+ +H+R H E+ K S
Sbjct: 854 CPMTFKWLWAQTEHIRVHTGERPYKCS 880
>09_06_0330 -
22376394-22376505,22376609-22376744,22376835-22376942,
22377056-22377152,22377490-22377594,22377699-22377884,
22378312-22378371,22378545-22378781
Length = 346
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 64 TDETEQSASEFIVPEILEVPVENEKLDVIPHT 95
T++ EQSA+EF+V ++ E P E L + P T
Sbjct: 126 TNKVEQSAAEFLVDKVSESPGEISVLALGPLT 157
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 34 ETCIIDHIEYDNECV-IGDDQTNVGGIVSIQTDETEQSASEFIVPEILEVPVENEKLDV 91
ET I+ I + E + + +++ + IVS +T+E E+ ++ EI +V VE E++ V
Sbjct: 364 ETSNIEAINVEQEEIKVEEEEEKI--IVSQETEEEEEKSAVISRDEITKVEVEREEIKV 420
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.131 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,464,957
Number of Sequences: 37544
Number of extensions: 218690
Number of successful extensions: 363
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 11
length of query: 213
length of database: 14,793,348
effective HSP length: 79
effective length of query: 134
effective length of database: 11,827,372
effective search space: 1584867848
effective search space used: 1584867848
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)
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