Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000086-TA|BGIBMGA000086-PA|IPR002589|Appr-1-p processing
         (244 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.53 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.53 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.53 
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   2.2  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   5.0  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   5.0  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   6.6  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   6.6  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   8.7  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   8.7  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   8.7  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   8.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 185 PCISTGIYGFPNRLAAHIALRTARKFLETNTEMNRIIF 222
           P  S G   FPN+   +   RT RK  + + +MN+ ++
Sbjct: 275 PFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMY 312


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 185 PCISTGIYGFPNRLAAHIALRTARKFLETNTEMNRIIF 222
           P  S G   FPN+   +   RT RK  + + +MN+ ++
Sbjct: 223 PFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMY 260


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 185 PCISTGIYGFPNRLAAHIALRTARKFLETNTEMNRIIF 222
           P  S G   FPN+   +   RT RK  + + +MN+ ++
Sbjct: 406 PFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMY 443


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 40  WSKYLNKSQGIDSKKSTTD 58
           W+K  NK Q ID K  T D
Sbjct: 105 WAKLNNKFQYIDEKLKTRD 123


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 23  RKIYKSSDFIDLENVDPWSKYLNKSQGIDSKKS---TTDDLK---EFEKIKI-NTEKNKS 75
           R  Y SS  ++LE     SKYL + + I   ++   T   +K   +  ++K    EKNK 
Sbjct: 89  RTAYTSSQLVELEREFHRSKYLCRPRRIQMAQNLNLTERQIKIWFQNRRMKFKKEEKNKV 148

Query: 76  ISERVS 81
           ++ + S
Sbjct: 149 VTPKTS 154


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 23  RKIYKSSDFIDLENVDPWSKYLNKSQGIDSKKS---TTDDLK---EFEKIKI-NTEKNKS 75
           R  Y SS  ++LE     SKYL + + I   ++   T   +K   +  ++K    EKNK 
Sbjct: 109 RTAYTSSQLVELEREFHRSKYLCRPRRIQMAQNLNLTERQIKIWFQNRRMKFKKEEKNKV 168

Query: 76  ISERVS 81
           ++ + S
Sbjct: 169 VTPKTS 174


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 131 CPTGDAKVTGGYNLPAKYIIHTVGPQDGSAEKLESCYEK 169
           CP    K T    L     +HT  P D + E++++   K
Sbjct: 197 CPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVK 235


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 60  LKEFEKIKINTEKNKSISERVSIFKGDITKLE 91
           L+EF++I +   K KSI  +    K  + K+E
Sbjct: 220 LREFDQIVVILSKVKSILNKKCCEKCGLKKIE 251


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 8   EIEKNRILKLSLEEKRKIYKSSDFIDLENVDPWSKYLNKSQGI 50
           E +  R    + +  R  Y S+  ++LE      KYL++ + I
Sbjct: 77  ETQPQRTKPTAGKRARTAYTSAQLVELEREFHHGKYLSRPRRI 119


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory
          receptor candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 12 NRILKLSLEEKRKIYKSSDFIDLENVDPW 40
          N ILKLSL++   I     ++++  + PW
Sbjct: 2  NMILKLSLKDIVFINPLVKYLNIFFITPW 30


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/15 (40%), Positives = 14/15 (93%)

Query: 18  SLEEKRKIYKSSDFI 32
           ++EEK+++Y+ S+F+
Sbjct: 299 TMEEKQELYEFSNFV 313


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 8   EIEKNRILKLSLEEKRKIYKSSDFIDLENVDPWSKYLNKSQGI 50
           E +  R    + +  R  Y S+  ++LE      KYL++ + I
Sbjct: 68  ETQPQRTKPTAGKRARTAYTSAQLVELEREFHHGKYLSRPRRI 110


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,321
Number of Sequences: 317
Number of extensions: 2301
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 14
length of query: 244
length of database: 114,650
effective HSP length: 55
effective length of query: 189
effective length of database: 97,215
effective search space: 18373635
effective search space used: 18373635
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)