Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000086-TA|BGIBMGA000086-PA|IPR002589|Appr-1-p processing
(244 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040... 121 5e-28
03_02_0926 + 12448032-12448231,12448727-12448815,12449956-124500... 106 1e-23
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 87 1e-17
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 42 3e-04
11_04_0168 + 14391244-14391325,14392132-14392155,14392256-143923... 31 0.85
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 29 4.6
11_06_0284 + 21909758-21913645 28 6.0
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 28 6.0
01_01_0895 + 7052118-7053110,7053249-7053252,7054450-7055189 28 6.0
11_06_0185 + 21018045-21022307 28 8.0
>10_08_0180 +
15502809-15503312,15503399-15503454,15503934-15504053,
15504190-15504260,15504603-15504696,15504772-15504978,
15505406-15505657,15505781-15505889,15506112-15506179,
15506278-15506347,15506429-15506503,15506600-15506691,
15506779-15506860
Length = 599
Score = 121 bits (292), Expect = 5e-28
Identities = 60/137 (43%), Positives = 82/137 (59%), Gaps = 7/137 (5%)
Query: 113 IHRAAGPFLQAECDSIGGCPTGDAKVTGGYNLPAKYIIHTVGPQ------DGSAEKLESC 166
+H AAG L EC ++GGC TG AK+T Y+LPA+ +IHTVGP+ + L C
Sbjct: 153 LHAAAGSGLAEECSTLGGCRTGMAKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHC 212
Query: 167 YEKCLSFQQEYQIKSIAFPCISTGIYGFPNRLAAHIALRTARKFLE-TNTEMNRIIFCTF 225
Y CL E ++SIA CI T +P AAH+A+RT R+FLE +++ ++FCT
Sbjct: 213 YRSCLELLIENGLESIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKSKIAGVVFCTV 272
Query: 226 LPIDVEIYETLMQLYFP 242
D EIY+ L+ LYFP
Sbjct: 273 SSSDTEIYKRLLPLYFP 289
>03_02_0926 +
12448032-12448231,12448727-12448815,12449956-12450096,
12450181-12450283,12450386-12450481,12450580-12450654,
12450754-12450823,12451028-12451111
Length = 285
Score = 106 bits (255), Expect = 1e-23
Identities = 63/158 (39%), Positives = 90/158 (56%), Gaps = 11/158 (6%)
Query: 75 SISERVSIFKGDITKLEIDAVVNAANSRLKAGGGVDGAIHRAAGPFLQAECDSI----GG 130
S S+ +S+ +T + I V NAAN R+ GGGVDGAIHR AGP L C + G
Sbjct: 108 SNSDYLSMTMKKMTVIHISQV-NAANERMLGGGGVDGAIHRTAGPELVEACRKVPEVKSG 166
Query: 131 --CPTGDAKVTGGYNLPAKYIIHTVGP---QDGSAE-KLESCYEKCLSFQQEYQIKSIAF 184
CPTG+A++T + LP +IHTVGP D E L + Y L ++ I+ IA
Sbjct: 167 VRCPTGEARITPAFKLPVSRVIHTVGPIYDMDKQPEVSLNNAYTNSLKLAKQNGIQYIAL 226
Query: 185 PCISTGIYGFPNRLAAHIALRTARKFLETNTEMNRIIF 222
P IS G+Y +P + A+ IA+ TA++F E++ ++F
Sbjct: 227 PAISCGVYRYPPKEASKIAVSTAQRFSNDIKEVHFVLF 264
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 87.0 bits (206), Expect = 1e-17
Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 76 ISERVSIFKGDITKLEIDAVVNAANSRLKAGGGVDGAIHRAAGPFLQAECDSIGGCPTGD 135
I+ ++ +++G LE+DAVVN+ N L G +H AAGP L EC ++GGC TG
Sbjct: 95 INSKICLWRGHPWNLEVDAVVNSTNENLDEAHSSPG-LHAAAGPGLAEECTTLGGCRTGM 153
Query: 136 AKVTGGYNLPAKYIIHTVGPQ------DGSAEKLESCYEKCL 171
AK+T Y+LPA+ +IHTVGP+ + L CY CL
Sbjct: 154 AKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCL 195
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 66 IKINTEKNKSISERVSIFKGDITKLE------IDAVVNAANSRLK-AGGGVDGAIHRAAG 118
+K K S R F GDIT+L+ + + NAAN RLK GGGV+ AI+ AAG
Sbjct: 332 VKEKAAKKNINSSRFFTFVGDITQLQSKGGLRCNVIANAANWRLKPGGGGVNAAIYNAAG 391
Query: 119 PFLQ 122
LQ
Sbjct: 392 EDLQ 395
>11_04_0168 +
14391244-14391325,14392132-14392155,14392256-14392381,
14392491-14392832,14392955-14393070,14393166-14393426,
14393875-14394072,14394177-14394254
Length = 408
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 52 SKKSTTDDLKEFEKIKINTEKNKSISERVSIFKG--DITKLEIDAVVNAANSRLKAGGGV 109
SKKS D+ + + +++ NK E ++ + G +K EI+ +N ANS++ G G
Sbjct: 61 SKKSKADETIDSTR---SSQDNKVHGEVINRWSGLYKFSKGEIEKAINYANSKICLGSGS 117
Query: 110 DGAIHRAAGP 119
G +++ P
Sbjct: 118 AGQVYQGVLP 127
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 33 DLENVDPWSKYLNKSQGIDSKKSTTD--DLKEFEK-IKINTEKNKSISERVSIFKGDITK 89
+++N D +L+ DSKK D D + +K ++ +E+NK + R+S K
Sbjct: 91 EMDNPDMAPYFLSFINASDSKKQAKDNQDNERLQKELESLSEENKDLKSRISSLLEQTNK 150
Query: 90 LEIDAV 95
E++ V
Sbjct: 151 AELEVV 156
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 35 ENVDPWSKYLNKSQGIDSKKSTTDDLK-EFEKIKINTEKNKSISE-RVSIFKGDITKL 90
E+ DPW Y+ K SKK +K + EK+KI + K S+ + KGD T L
Sbjct: 295 EDPDPWKDYVKKCGNHRSKKRMLRKIKRKIEKMKIYEKFEKIKSDIQDGQQKGDKTLL 352
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 27 KSSDFIDLENVDPWSKYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFK-- 84
K D IDLE +D +SK N+ K EKI+ + + E++ K
Sbjct: 309 KEVDHIDLEELDKFSKLQNEQNANRLKVLEIQQKLSSEKIEQTKISHLAAKEQMEAAKVQ 368
Query: 85 GDITKLEIDAVVNAANSRL 103
+ KLE++A + +RL
Sbjct: 369 REARKLEVEARMYETYNRL 387
>01_01_0895 + 7052118-7053110,7053249-7053252,7054450-7055189
Length = 578
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 39 PWSKYLNKSQGIDSKKSTT----DDLKEFEKIKINTEKNKSISERVSIFKGDITKLE-ID 93
PW +++K G+D+K + T D L E I + E+ +S + V + D + +D
Sbjct: 242 PWLAWVDKLTGLDAKVARTSAAMDGLLE-RVIADHRERRRSRGQAVGDGEADADHRDFVD 300
Query: 94 AVVNAANSRLKAGGGVDGAI 113
+++ + + AG G G +
Sbjct: 301 VMLDVSEAEEGAGAGAGGVL 320
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 35 ENVDPWSKYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDI 87
E+ DPW Y K SKK D KIK N +K +I E++ K DI
Sbjct: 300 EDPDPWQDYYKKCGIYRSKKGVLD------KIKRNIKK-MNIYEKLDKIKSDI 345
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,008,477
Number of Sequences: 37544
Number of extensions: 295980
Number of successful extensions: 853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 11
length of query: 244
length of database: 14,793,348
effective HSP length: 80
effective length of query: 164
effective length of database: 11,789,828
effective search space: 1933531792
effective search space used: 1933531792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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