GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000086-TA|BGIBMGA000086-PA|IPR002589|Appr-1-p processing
         (244 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox transcrip...    27   0.67 
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   1.5  

>AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox
          transcription factor protein.
          Length = 185

 Score = 26.6 bits (56), Expect = 0.67
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 16 KLSLEEKRKIYKSSDFIDLENVDPWSKYLNKSQGID---SKKSTTDDLK-EFEKIKINTE 71
          K S +  R+ Y     I+LE    +++YLN+ + I+     K T   +K  F+  ++  +
Sbjct: 3  KESSKRTRQSYSRHQTIELEKEFHFNRYLNRRRRIEIASMLKLTERQIKIWFQNRRMKAK 62

Query: 72 KNKSISERVS--IFKGDITKLEIDAVV 96
          K+ S S       + G+I +  ++++V
Sbjct: 63 KDNSASANTPDLTYDGEIPQQSLESIV 89


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 22  KRKIYKSSDFIDLENVDPWSKYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSI 76
           +RK++ S+  ID++       +L   QGI   + +      FE++  N+++N+ +
Sbjct: 285 ERKVWNSASLIDVDRDGKDELWLTGPQGIMGFRISNG---RFEQVPFNSDQNEDL 336


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.135    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,505
Number of Sequences: 2123
Number of extensions: 10288
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 2
length of query: 244
length of database: 516,269
effective HSP length: 62
effective length of query: 182
effective length of database: 384,643
effective search space: 70005026
effective search space used: 70005026
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)