Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000084-TA|BGIBMGA000084-PA|IPR007012|Poly(A) polymerase,
central region, IPR002934|DNA polymerase, beta-like region,
IPR007010|Poly(A) polymerase, RNA-binding region, IPR011068|Poly(A)
polymerase, C-terminal-like
         (596 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    31   0.017
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    31   0.017
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   4.5  

>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 31.5 bits (68), Expect = 0.017
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 210 CVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGG-VSWAMLVAR 268
           C   + GC    +++ +  NI    +  R++ +W     +Y N L +L G V+    +  
Sbjct: 101 CCSVIFGCIFALKVIEVFKNIEEVDVAFRSLAVWVPYKHLYVNILIHLSGLVTIVATLTV 160

Query: 269 TCQLYPNALPATLVHKFFLVF 289
           T   + +    T  +  F+VF
Sbjct: 161 TIIFFASYQYGTKTYSLFIVF 181


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 31.5 bits (68), Expect = 0.017
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 210 CVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGG-VSWAMLVAR 268
           C   + GC    +++ +  NI    +  R++ +W     +Y N L +L G V+    +  
Sbjct: 101 CCSVIFGCIFALKVIEVFKNIEEVDVAFRSLAVWVPYKHLYVNILIHLSGLVTIVATLTV 160

Query: 269 TCQLYPNALPATLVHKFFLVF 289
           T   + +    T  +  F+VF
Sbjct: 161 TIIFFASYQYGTKTYSLFIVF 181


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 194 SFDLRDDMLLKNLDQKCVRSLNG 216
           S D+RD++LLKNL      S  G
Sbjct: 669 SVDVRDNILLKNLQNPSTGSKPG 691


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,281
Number of Sequences: 317
Number of extensions: 6885
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 596
length of database: 114,650
effective HSP length: 61
effective length of query: 535
effective length of database: 95,313
effective search space: 50992455
effective search space used: 50992455
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)