Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000084-TA|BGIBMGA000084-PA|IPR007012|Poly(A) polymerase,
central region, IPR002934|DNA polymerase, beta-like region,
IPR007010|Poly(A) polymerase, RNA-binding region, IPR011068|Poly(A)
polymerase, C-terminal-like
(596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17980.1 68414.m02225 nucleotidyltransferase family protein c... 418 e-117
At4g32850.6 68417.m04675 nucleotidyltransferase family protein c... 405 e-113
At4g32850.5 68417.m04674 nucleotidyltransferase family protein c... 405 e-113
At4g32850.4 68417.m04671 nucleotidyltransferase family protein c... 405 e-113
At4g32850.3 68417.m04673 nucleotidyltransferase family protein c... 405 e-113
At4g32850.2 68417.m04672 nucleotidyltransferase family protein c... 405 e-113
At4g32850.1 68417.m04676 nucleotidyltransferase family protein c... 405 e-113
At2g25850.2 68415.m03104 nucleotidyltransferase family protein c... 402 e-112
At2g25850.1 68415.m03103 nucleotidyltransferase family protein c... 402 e-112
At1g17980.2 68414.m02224 nucleotidyltransferase family protein c... 320 1e-87
At3g06560.1 68416.m00762 poly (A) polymerase family protein simi... 228 7e-60
At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal... 30 5.0
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 30 5.0
At3g44730.1 68416.m04814 kinesin motor protein-related similar t... 30 5.0
At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR ... 30 5.0
At5g61350.1 68418.m07698 protein kinase family protein contains ... 29 6.6
At3g61415.1 68416.m06878 SKP1 family protein low similarity to S... 29 6.6
At1g52600.1 68414.m05938 signal peptidase, putative similar to S... 29 8.8
>At1g17980.1 68414.m02225 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 713
Score = 418 bits (1030), Expect = e-117
Identities = 206/461 (44%), Positives = 285/461 (61%), Gaps = 4/461 (0%)
Query: 27 QQNLKTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVR 86
QQN + G++ IS GP D+ KT +L+ L G++ES+ E R EVLG L ++V+
Sbjct: 5 QQNGQRFGVSEPISMGGPTEFDVIKTRELEKHLQDVGLYESKEEAVRREEVLGILDQIVK 64
Query: 87 QWIRDESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIER-CDYFLT 145
WI+ S K + + I+TFGSYRLGVH GADID LCV PRH R D+F
Sbjct: 65 TWIKTISRAKGLNDQLLHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREGDFFGE 124
Query: 146 FYDLLKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKN 205
+L + P+V +L V DA VP++ +G+ IDLL+A+L L IP+ DL D +L+N
Sbjct: 125 LQRMLSEMPEVTELHPVPDAHVPLMGFKLNGVSIDLLYAQLPLWVIPEDLDLSQDSILQN 184
Query: 206 LDQKCVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAML 265
D++ VRSLNGCRVTD+ILRLVPNI NFR TLR ++ WAKR G+YSN G+LGG++WA+L
Sbjct: 185 ADEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALL 244
Query: 266 VARTCQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHL 325
VAR CQLYPNALP LV +FF VF QW WP + L PD +LG VWDPR+N DR H+
Sbjct: 245 VARICQLYPNALPNILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLHI 304
Query: 326 MPIITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYK 385
MPIITPAYP NS++NVS ST I+ EF+ G + + + K W+ LFE FF YK
Sbjct: 305 MPIITPAYPCMNSSYNVSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAFFEAYK 364
Query: 386 HFIVLLASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECY--NSVPLNTNN 443
+++ + S+A+ DD +W G +ES++R L +ER+ + H +P + S PL+ +
Sbjct: 365 NYLQIDISAANVDDLRKWKGWVESRLRQLTLKIERHFKMLHCHPHPHDFQDTSRPLHCSY 424
Query: 444 GQPLALPPGSTIPRETSPELNKN-DKGEVVVNHCSMWFIGL 483
L G ++ + ++ + VN ++W G+
Sbjct: 425 FMGLQRKQGVPAAEGEQFDIRRTVEEFKHTVNAYTLWIPGM 465
>At4g32850.6 68417.m04675 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 745
Score = 405 bits (998), Expect = e-113
Identities = 188/406 (46%), Positives = 266/406 (65%), Gaps = 2/406 (0%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K+ G+T +S AGP DI++ +L+ L G++ES+ + R EVLG + ++V+ W++
Sbjct: 19 KSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMRREEVLGRIDQIVKHWVK 78
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERC-DYFLTFYDL 149
+ ++ + + I+TFGSYRLGVH GADID LCV P ++ R D+F+ +D+
Sbjct: 79 QLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHDI 138
Query: 150 LKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQK 209
L + +V +L V DA VPV+K F GI IDLL+A ++L +P D+ +L +D+
Sbjct: 139 LAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEP 198
Query: 210 CVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVART 269
VRSLNGCRV D+IL+LVPN +FR TLR +K WAK+ G+YSN G+LGGV+WA+LVAR
Sbjct: 199 TVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALLVARV 258
Query: 270 CQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPII 329
CQLYPNA+P+ LV +FF V++QW+WP PV+L + LGFPVWD R N DRYHLMPII
Sbjct: 259 CQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPII 318
Query: 330 TPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIV 389
TPAYP NS++NVS ST ++ E+F+ G + EI L K W LFE FF YK+++
Sbjct: 319 TPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQ 378
Query: 390 LLASSASADDQLQWCGLIESKIRHLIATLERNQH-ITIAHVNPECY 434
+ +A A+D L W G +ES+ R L +ER+ + + + H P Y
Sbjct: 379 VDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEY 424
>At4g32850.5 68417.m04674 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 745
Score = 405 bits (998), Expect = e-113
Identities = 188/406 (46%), Positives = 266/406 (65%), Gaps = 2/406 (0%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K+ G+T +S AGP DI++ +L+ L G++ES+ + R EVLG + ++V+ W++
Sbjct: 19 KSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMRREEVLGRIDQIVKHWVK 78
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERC-DYFLTFYDL 149
+ ++ + + I+TFGSYRLGVH GADID LCV P ++ R D+F+ +D+
Sbjct: 79 QLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHDI 138
Query: 150 LKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQK 209
L + +V +L V DA VPV+K F GI IDLL+A ++L +P D+ +L +D+
Sbjct: 139 LAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEP 198
Query: 210 CVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVART 269
VRSLNGCRV D+IL+LVPN +FR TLR +K WAK+ G+YSN G+LGGV+WA+LVAR
Sbjct: 199 TVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALLVARV 258
Query: 270 CQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPII 329
CQLYPNA+P+ LV +FF V++QW+WP PV+L + LGFPVWD R N DRYHLMPII
Sbjct: 259 CQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPII 318
Query: 330 TPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIV 389
TPAYP NS++NVS ST ++ E+F+ G + EI L K W LFE FF YK+++
Sbjct: 319 TPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQ 378
Query: 390 LLASSASADDQLQWCGLIESKIRHLIATLERNQH-ITIAHVNPECY 434
+ +A A+D L W G +ES+ R L +ER+ + + + H P Y
Sbjct: 379 VDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEY 424
>At4g32850.4 68417.m04671 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 730
Score = 405 bits (998), Expect = e-113
Identities = 188/406 (46%), Positives = 266/406 (65%), Gaps = 2/406 (0%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K+ G+T +S AGP DI++ +L+ L G++ES+ + R EVLG + ++V+ W++
Sbjct: 19 KSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMRREEVLGRIDQIVKHWVK 78
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERC-DYFLTFYDL 149
+ ++ + + I+TFGSYRLGVH GADID LCV P ++ R D+F+ +D+
Sbjct: 79 QLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHDI 138
Query: 150 LKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQK 209
L + +V +L V DA VPV+K F GI IDLL+A ++L +P D+ +L +D+
Sbjct: 139 LAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEP 198
Query: 210 CVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVART 269
VRSLNGCRV D+IL+LVPN +FR TLR +K WAK+ G+YSN G+LGGV+WA+LVAR
Sbjct: 199 TVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALLVARV 258
Query: 270 CQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPII 329
CQLYPNA+P+ LV +FF V++QW+WP PV+L + LGFPVWD R N DRYHLMPII
Sbjct: 259 CQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPII 318
Query: 330 TPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIV 389
TPAYP NS++NVS ST ++ E+F+ G + EI L K W LFE FF YK+++
Sbjct: 319 TPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQ 378
Query: 390 LLASSASADDQLQWCGLIESKIRHLIATLERNQH-ITIAHVNPECY 434
+ +A A+D L W G +ES+ R L +ER+ + + + H P Y
Sbjct: 379 VDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEY 424
>At4g32850.3 68417.m04673 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 735
Score = 405 bits (998), Expect = e-113
Identities = 188/406 (46%), Positives = 266/406 (65%), Gaps = 2/406 (0%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K+ G+T +S AGP DI++ +L+ L G++ES+ + R EVLG + ++V+ W++
Sbjct: 19 KSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMRREEVLGRIDQIVKHWVK 78
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERC-DYFLTFYDL 149
+ ++ + + I+TFGSYRLGVH GADID LCV P ++ R D+F+ +D+
Sbjct: 79 QLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHDI 138
Query: 150 LKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQK 209
L + +V +L V DA VPV+K F GI IDLL+A ++L +P D+ +L +D+
Sbjct: 139 LAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEP 198
Query: 210 CVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVART 269
VRSLNGCRV D+IL+LVPN +FR TLR +K WAK+ G+YSN G+LGGV+WA+LVAR
Sbjct: 199 TVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALLVARV 258
Query: 270 CQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPII 329
CQLYPNA+P+ LV +FF V++QW+WP PV+L + LGFPVWD R N DRYHLMPII
Sbjct: 259 CQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPII 318
Query: 330 TPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIV 389
TPAYP NS++NVS ST ++ E+F+ G + EI L K W LFE FF YK+++
Sbjct: 319 TPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQ 378
Query: 390 LLASSASADDQLQWCGLIESKIRHLIATLERNQH-ITIAHVNPECY 434
+ +A A+D L W G +ES+ R L +ER+ + + + H P Y
Sbjct: 379 VDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEY 424
>At4g32850.2 68417.m04672 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 738
Score = 405 bits (998), Expect = e-113
Identities = 188/406 (46%), Positives = 266/406 (65%), Gaps = 2/406 (0%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K+ G+T +S AGP DI++ +L+ L G++ES+ + R EVLG + ++V+ W++
Sbjct: 19 KSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMRREEVLGRIDQIVKHWVK 78
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERC-DYFLTFYDL 149
+ ++ + + I+TFGSYRLGVH GADID LCV P ++ R D+F+ +D+
Sbjct: 79 QLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHDI 138
Query: 150 LKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQK 209
L + +V +L V DA VPV+K F GI IDLL+A ++L +P D+ +L +D+
Sbjct: 139 LAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEP 198
Query: 210 CVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVART 269
VRSLNGCRV D+IL+LVPN +FR TLR +K WAK+ G+YSN G+LGGV+WA+LVAR
Sbjct: 199 TVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALLVARV 258
Query: 270 CQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPII 329
CQLYPNA+P+ LV +FF V++QW+WP PV+L + LGFPVWD R N DRYHLMPII
Sbjct: 259 CQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPII 318
Query: 330 TPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIV 389
TPAYP NS++NVS ST ++ E+F+ G + EI L K W LFE FF YK+++
Sbjct: 319 TPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQ 378
Query: 390 LLASSASADDQLQWCGLIESKIRHLIATLERNQH-ITIAHVNPECY 434
+ +A A+D L W G +ES+ R L +ER+ + + + H P Y
Sbjct: 379 VDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEY 424
>At4g32850.1 68417.m04676 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 741
Score = 405 bits (998), Expect = e-113
Identities = 188/406 (46%), Positives = 266/406 (65%), Gaps = 2/406 (0%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K+ G+T +S AGP DI++ +L+ L G++ES+ + R EVLG + ++V+ W++
Sbjct: 19 KSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMRREEVLGRIDQIVKHWVK 78
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERC-DYFLTFYDL 149
+ ++ + + I+TFGSYRLGVH GADID LCV P ++ R D+F+ +D+
Sbjct: 79 QLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHDI 138
Query: 150 LKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQK 209
L + +V +L V DA VPV+K F GI IDLL+A ++L +P D+ +L +D+
Sbjct: 139 LAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEP 198
Query: 210 CVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVART 269
VRSLNGCRV D+IL+LVPN +FR TLR +K WAK+ G+YSN G+LGGV+WA+LVAR
Sbjct: 199 TVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALLVARV 258
Query: 270 CQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPII 329
CQLYPNA+P+ LV +FF V++QW+WP PV+L + LGFPVWD R N DRYHLMPII
Sbjct: 259 CQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPII 318
Query: 330 TPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIV 389
TPAYP NS++NVS ST ++ E+F+ G + EI L K W LFE FF YK+++
Sbjct: 319 TPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQ 378
Query: 390 LLASSASADDQLQWCGLIESKIRHLIATLERNQH-ITIAHVNPECY 434
+ +A A+D L W G +ES+ R L +ER+ + + + H P Y
Sbjct: 379 VDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEY 424
>At2g25850.2 68415.m03104 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain; identical to cDNA GI:31747890
Length = 800
Score = 402 bits (991), Expect = e-112
Identities = 190/423 (44%), Positives = 277/423 (65%), Gaps = 10/423 (2%)
Query: 14 NTQPIKATNEYQNQQNLKTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHH 73
++QP+KA+ LK+ G+T +S AGP D+++ +L+ L G++ES+ E
Sbjct: 12 SSQPVKAS--------LKSYGITEPLSIAGPSAADVKRNLELEKFLVDEGLYESKEETMR 63
Query: 74 RMEVLGALHRLVRQWIRDESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVA 133
R EV+ + ++V+ W++ + ++ + + I+TFGSYRLGVH ADID LCV
Sbjct: 64 REEVVVRIDQIVKHWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPMADIDTLCVG 123
Query: 134 PRHIERC-DYFLTFYDLLKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIP 192
P ++ R D+F+ F D+L + +V +L+ V DA VPV+K F GI IDLL+A ++L IP
Sbjct: 124 PSYVNREEDFFIFFRDILAEMEEVTELQPVTDAHVPVMKFKFQGISIDLLYASISLLVIP 183
Query: 193 DSFDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSN 252
D+ + +L ++D++ VRSLNGCRV D+IL+LVPN +FR TLR +K WAK+ G+YSN
Sbjct: 184 QDLDISNSSVLCDVDEQTVRSLNGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSN 243
Query: 253 TLGYLGGVSWAMLVARTCQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPV 312
G+LGGV+WA+LVAR CQ YPNA+P+ LV +FF V++QW+WP PV+L + +L FPV
Sbjct: 244 VTGFLGGVNWALLVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPV 303
Query: 313 WDPRVNVADRYHLMPIITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWE 372
WDPR N DRYHLMPIITPAYP NS++NVS ST ++ E+F+ G + EI L K W
Sbjct: 304 WDPRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNTICQEIELNKQHWS 363
Query: 373 RLFEAPNFFSRYKHFIVLLASSASADDQLQWCGLIESKIRHLIATLERNQH-ITIAHVNP 431
LF+ FF YK+++ + +A A+D L W G +ES+ R L +ER+ + + + H P
Sbjct: 364 SLFQQYMFFEAYKNYLQVDVLAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQP 423
Query: 432 ECY 434
Y
Sbjct: 424 NEY 426
>At2g25850.1 68415.m03103 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain; identical to cDNA GI:31747890
Length = 787
Score = 402 bits (991), Expect = e-112
Identities = 190/423 (44%), Positives = 277/423 (65%), Gaps = 10/423 (2%)
Query: 14 NTQPIKATNEYQNQQNLKTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHH 73
++QP+KA+ LK+ G+T +S AGP D+++ +L+ L G++ES+ E
Sbjct: 12 SSQPVKAS--------LKSYGITEPLSIAGPSAADVKRNLELEKFLVDEGLYESKEETMR 63
Query: 74 RMEVLGALHRLVRQWIRDESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVA 133
R EV+ + ++V+ W++ + ++ + + I+TFGSYRLGVH ADID LCV
Sbjct: 64 REEVVVRIDQIVKHWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPMADIDTLCVG 123
Query: 134 PRHIERC-DYFLTFYDLLKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIP 192
P ++ R D+F+ F D+L + +V +L+ V DA VPV+K F GI IDLL+A ++L IP
Sbjct: 124 PSYVNREEDFFIFFRDILAEMEEVTELQPVTDAHVPVMKFKFQGISIDLLYASISLLVIP 183
Query: 193 DSFDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSN 252
D+ + +L ++D++ VRSLNGCRV D+IL+LVPN +FR TLR +K WAK+ G+YSN
Sbjct: 184 QDLDISNSSVLCDVDEQTVRSLNGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSN 243
Query: 253 TLGYLGGVSWAMLVARTCQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPV 312
G+LGGV+WA+LVAR CQ YPNA+P+ LV +FF V++QW+WP PV+L + +L FPV
Sbjct: 244 VTGFLGGVNWALLVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPV 303
Query: 313 WDPRVNVADRYHLMPIITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWE 372
WDPR N DRYHLMPIITPAYP NS++NVS ST ++ E+F+ G + EI L K W
Sbjct: 304 WDPRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNTICQEIELNKQHWS 363
Query: 373 RLFEAPNFFSRYKHFIVLLASSASADDQLQWCGLIESKIRHLIATLERNQH-ITIAHVNP 431
LF+ FF YK+++ + +A A+D L W G +ES+ R L +ER+ + + + H P
Sbjct: 364 SLFQQYMFFEAYKNYLQVDVLAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQP 423
Query: 432 ECY 434
Y
Sbjct: 424 NEY 426
>At1g17980.2 68414.m02224 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 586
Score = 320 bits (787), Expect = 1e-87
Identities = 153/338 (45%), Positives = 215/338 (63%), Gaps = 3/338 (0%)
Query: 149 LLKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQ 208
+L + P+V +L V DA VP++ +G+ IDLL+A+L L IP+ DL D +L+N D+
Sbjct: 1 MLSEMPEVTELHPVPDAHVPLMGFKLNGVSIDLLYAQLPLWVIPEDLDLSQDSILQNADE 60
Query: 209 KCVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVAR 268
+ VRSLNGCRVTD+ILRLVPNI NFR TLR ++ WAKR G+YSN G+LGG++WA+LVAR
Sbjct: 61 QTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVAR 120
Query: 269 TCQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPI 328
CQLYPNALP LV +FF VF QW WP + L PD +LG VWDPR+N DR H+MPI
Sbjct: 121 ICQLYPNALPNILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLHIMPI 180
Query: 329 ITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFI 388
ITPAYP NS++NVS ST I+ EF+ G + + + K W+ LFE FF YK+++
Sbjct: 181 ITPAYPCMNSSYNVSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAFFEAYKNYL 240
Query: 389 VLLASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECY--NSVPLNTNNGQP 446
+ S+A+ DD +W G +ES++R L +ER+ + H +P + S PL+ +
Sbjct: 241 QIDISAANVDDLRKWKGWVESRLRQLTLKIERHFKMLHCHPHPHDFQDTSRPLHCSYFMG 300
Query: 447 LALPPGSTIPRETSPELNKN-DKGEVVVNHCSMWFIGL 483
L G ++ + ++ + VN ++W G+
Sbjct: 301 LQRKQGVPAAEGEQFDIRRTVEEFKHTVNAYTLWIPGM 338
>At3g06560.1 68416.m00762 poly (A) polymerase family protein similar
to SP|Q9BWT3 Poly(A) polymerase gamma (EC 2.7.7.19) (PAP
gamma) (Polynucleotide adenylyltransferase gamma) (SRP
RNA 3' adenylating enzyme) {Homo sapiens}; contains Pfam
profiles PF04926: Poly(A) polymerase predicted RNA
binding domain, PF04928: Poly(A) polymerase central
domain
Length = 483
Score = 228 bits (558), Expect = 7e-60
Identities = 122/358 (34%), Positives = 198/358 (55%), Gaps = 12/358 (3%)
Query: 63 GVFESEAEMHHRMEVLGALHRLVRQWIRDESLRKNMPPSVADTVGGNIYTFGSYRLGVHH 122
G+ S + R V+ L ++V +W+++ + + +P + D I +GSY LGV+
Sbjct: 5 GLIPSLEDEVKRRGVINQLRKIVVRWVKNVAWQHRLPQNQIDATNATILPYGSYGLGVYG 64
Query: 123 RGADIDALCVAPRHIERC-DYFLTFYDLLKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDL 181
+DIDALC+ P D+F++ D+LK + +V +L V+DA VP+I+ FDGI +DL
Sbjct: 65 SESDIDALCIGPFFASIAEDFFISLRDMLKSRREVSELHCVKDAKVPLIRFKFDGILVDL 124
Query: 182 LFARLALKEIPDSFDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNINNFRLTLRAIK 241
+A+L + IP++ D+ + L+++D+ + L+G R IL+LVP++ F+ LR +K
Sbjct: 125 PYAQLRVLSIPNNVDVLNPFFLRDIDETSWKILSGVRANKCILQLVPSLELFQSLLRCVK 184
Query: 242 LWAKRHGIYSNTLGYLGGVSWAMLVARTCQLYPNALPATLVHKFFLVFSQWKWPQPVLLK 301
LWAKR G+Y N G+LGGV A+L A C PNA ++L+ FF F+ W+WP PV+L
Sbjct: 185 LWAKRRGVYGNLNGFLGGVHMAILAAFVCGYQPNATLSSLLANFFYTFAHWQWPTPVVLL 244
Query: 302 QPDHVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVT 361
+ + + G P LMPI P Q ++ ST I+ EF LG +T
Sbjct: 245 EDTYPSTGAPP-----------GLMPIQLPCGSHQYCNSTITRSTFYKIVAEFLLGHNLT 293
Query: 362 DEIMLGKCGWERLFEAPNFFSRYKHFIVLLASSASADDQLQWCGLIESKIRHLIATLE 419
+ + W+ LFE + + Y F + S+A+ +D W G ++S+ R L+ +E
Sbjct: 294 KDYLKLNFSWKDLFELYPYANTYTWFTKIHLSAANQEDLSDWVGWVKSRFRCLLIKIE 351
>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha
catalytic subunit, putative similar to SP|O48653 DNA
polymerase alpha catalytic subunit (EC 2.7.7.7) {Oryza
sativa}; contains Pfam profiles: PF03175 DNA polymerase
type B, organellar and viral, PF00136 DNA polymerase
family B, PF03104 DNA polymerase family B, exonuclease
domain
Length = 1492
Score = 29.9 bits (64), Expect = 5.0
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 108 GNIYTFGSYRLGVHHRGADIDALCVAPRHIERC------DYFLTFYDLLKQQPQVKDLRA 161
G IY FG ++G ++ CV ++I+RC D ++L+ + +VKD R
Sbjct: 362 GTIYLFGKVKMGDTYKSC-----CVVVKNIQRCVYAIPNDSIFPSHELIMLEQEVKDSRL 416
Query: 162 VEDAF 166
++F
Sbjct: 417 SPESF 421
>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
identical to ataxia-telangiectasia mutated protein (Atm)
[Arabidopsis thaliana] GI:7529272; contains Pfam profile
PF00855: PWWP domain; contains GA donor splice site at
exon 73
Length = 3255
Score = 29.9 bits (64), Expect = 5.0
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 259 GVSWAMLVARTCQLY-PNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNL 308
GVS A L+ T QL+ PNA P K+F+ F W P LL DH NL
Sbjct: 1987 GVSLAGLI-ETSQLFIPNAEP-----KYFIHFCS-HWLLPALLLHEDHTNL 2030
>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
other kinesin-like proteins of A. thaliana: F02P16.12
(PID:g2191180), katA (D11371), katB (D21137), and katC
(D21138); contains non-consensus AT-AC splice sites at
intron 10
Length = 1087
Score = 29.9 bits (64), Expect = 5.0
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 485 FEKTNVNVDLTYDISSFTKAVLYQAENTNMLREGLTIEARHVRRKQLHQYLSA-SLLCRR 543
F+K +V + L D S K YQ + N + H R + +S S LC
Sbjct: 946 FQKLDVGISLRSDADSEAKVGNYQTQKGNNNHNVI-----HSRFQNFDVGISLFSDLCAG 1000
Query: 544 ERTASGNKRKPDGALTHPPKKSKRLS-ESSNGSANGTAETPKADASTS 590
+++ S K PP KSK SS S N T A TS
Sbjct: 1001 DKSDSTLKSDSSETDNEPPSKSKNAQRNSSKNSLNHKLRTIYAHEDTS 1048
>At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 885
Score = 29.9 bits (64), Expect = 5.0
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 158 DLRAVEDAFVPVIKMNFDGIE-IDLLFARLALKEIPDSFDLRDDMLLK 204
D +ED +P++K ++D + D L P+ F++R +ML++
Sbjct: 383 DFSGMEDEILPILKYSYDSLNGEDAKSCFLYCSLFPEDFEIRKEMLIE 430
>At5g61350.1 68418.m07698 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 842
Score = 29.5 bits (63), Expect = 6.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 322 RYHLMPIITPAYPQQNSTFNVSASTRTIIMEEFRLG 357
R H P+ P Y NS F+V+ T T+++ +F G
Sbjct: 113 RLHFYPLNHPLYNLTNSVFSVTTDT-TVLLHDFSAG 147
>At3g61415.1 68416.m06878 SKP1 family protein low similarity to
SP|P52285 Glycoprotein FP21 precursor {Dictyostelium
discoideum}; contains Pfam profile PF01466: Skp1 family,
dimerisation domain
Length = 351
Score = 29.5 bits (63), Expect = 6.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 563 KKSKRLSESSNGSANGTAETPKAD 586
KK+K+ E NGS+NGT E + D
Sbjct: 223 KKNKKRKEQKNGSSNGTCEALEKD 246
>At1g52600.1 68414.m05938 signal peptidase, putative similar to
SP|P13679 Microsomal signal peptidase 21 kDa subunit (EC
3.4.-.-) {Canis familiaris}; contains Pfam profile
PF00461: Signal peptidase I
Length = 180
Score = 29.1 bits (62), Expect = 8.8
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 220 TDEILRLVPNINNF---RLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLV 266
T E+ L NN+ RL +LW RH I +G+L V W ++
Sbjct: 107 TGEVDVLTKGDNNYGDDRLLYAEGQLWLHRHHIMGRAVGFLPYVGWVTII 156
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.134 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,588,478
Number of Sequences: 28952
Number of extensions: 634192
Number of successful extensions: 1652
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1617
Number of HSP's gapped (non-prelim): 28
length of query: 596
length of database: 12,070,560
effective HSP length: 85
effective length of query: 511
effective length of database: 9,609,640
effective search space: 4910526040
effective search space used: 4910526040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -