Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000084-TA|BGIBMGA000084-PA|IPR007012|Poly(A) polymerase,
central region, IPR002934|DNA polymerase, beta-like region,
IPR007010|Poly(A) polymerase, RNA-binding region, IPR011068|Poly(A)
polymerase, C-terminal-like
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 387 e-108
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 32 0.20
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 32 0.26
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 29 1.8
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 29 1.8
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 28 4.2
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 4.2
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 28 4.2
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 27 5.6
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 9.8
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 27 9.8
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 9.8
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 27 9.8
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 9.8
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 387 bits (953), Expect = e-108
Identities = 182/398 (45%), Positives = 264/398 (66%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K G+T ISTA + L L +FES AE R++VL L ++ ++++
Sbjct: 4 KQWGITPPISTAPATEQENALNTALINELKNQNLFESPAESEKRVKVLDELQQITTEFVK 63
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLL 150
SL K+M +A+ GG I+T+GSYRLGV+ G+DID L V P+H+ R ++F +L
Sbjct: 64 KVSLAKHMNEKMANEAGGKIFTYGSYRLGVYGPGSDIDTLVVVPKHVSRDNFFQDLEPML 123
Query: 151 KQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKC 210
+++ +V DL AV DA+VP+IK F GI IDL+FARL++ +P +L D+ LLK ++++C
Sbjct: 124 REREEVTDLAAVPDAYVPIIKFKFLGISIDLIFARLSVPRVPRDLELSDNNLLKGVEERC 183
Query: 211 VRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTC 270
V SLNG RVTD+IL+LVPN F+ LRAIK WA+R IY+N +G+ GGV+WAM+VAR C
Sbjct: 184 VLSLNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAWAMMVARIC 243
Query: 271 QLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPIIT 330
QLYPNA+ + +V KFF + QW WPQP+LLK + L +W+P++ +D+ H MPIIT
Sbjct: 244 QLYPNAVSSVIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPSDKAHRMPIIT 303
Query: 331 PAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIVL 390
PAYP +T N++ ST+TII+ E + D+IM+ W LF+ +FF RYKH++ +
Sbjct: 304 PAYPSMCATHNITLSTQTIILREMVRAGEIADQIMVKALPWSALFQKHDFFHRYKHYLTI 363
Query: 391 LASSASADDQLQWCGLIESKIRHLIATLERNQHITIAH 428
A++ +A+ QL+W GL+ESK+RHL+ LE I +AH
Sbjct: 364 TAAAKTAEAQLKWAGLVESKLRHLVTRLELVDAIALAH 401
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 109 NIYTFGSYRLGVHHRGADIDALCVAPRHIER---CDYFLTFYDLLKQQPQVKDLRAVEDA 165
++Y FGS+ ++ +D+D + ++P H R D F+ + LK+ +++ + A
Sbjct: 281 SLYVFGSFETKLYLPTSDLDLVIISPEHHYRGTKKDMFVLAHH-LKKLKLASEVQVITTA 339
Query: 166 FVPVIK 171
VP+IK
Sbjct: 340 NVPIIK 345
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 31.9 bits (69), Expect = 0.26
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 110 IYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLLKQ--QPQVKDLRAVEDAFV 167
I FGSYR G+ + +D+D + + + + L +YD +K + + ++ + A +
Sbjct: 924 IACFGSYRTGLMTKNSDLDLVIYSSK-----EALLPYYDRVKSIIKNEFSNVMPIRGARI 978
Query: 168 PVIKMNFD-GIEIDLLFARL 186
P+IK I DL F L
Sbjct: 979 PIIKFTGQYNIHCDLSFDNL 998
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/36 (55%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 554 PDGALTHPPKKSKRLSESSNGSANGTAETPKADAST 589
P GA +P K S LS SSN SA+ E PKA AST
Sbjct: 280 PVGA--YPEKSSYLLSNSSNDSAS-RKEKPKARAST 312
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 536 SASLLCRRERTASGNKRKPDGALTHPPKKSKRLSESSNGSANGTAETPKADASTSST 592
S S + + A+ + +G PKKSK+ + + AN T K S ST
Sbjct: 532 SKSKKAKASKLANDTSKNANGETKSTPKKSKKKTSKAQQEANSTTAEGKEKLSGDST 588
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 27.9 bits (59), Expect = 4.2
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 363 EIMLGKCGWERLFEA-----PNFFSRYKHFIVLLASSASAD-DQLQWCGLIESKIRHLIA 416
EI+ C E F P F +RY + ++SS++++ D+++ I+SKI
Sbjct: 294 EILTVHCDLEESFSIVFSTQPRFIARYNELVQAVSSSSNSEIDEVEDAETIDSKI----- 348
Query: 417 TLERNQHITIAHVNPECYNSVPLNTNNGQPLALPPGSTIPRETSPELNKNDKGE 470
LE+ + N E NSV + + + + L P E + +L ND E
Sbjct: 349 -LEKRNDL-----NNEEPNSV-VAEDGSEIITLDENDQSPNEATEKLRDNDLEE 395
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 483 LVFEKTNVNVDLTYDISSFTKAVLYQA 509
++ E+ NV++DLTYD + T A +++A
Sbjct: 1258 VLMEENNVHLDLTYDANYTTGAYVFKA 1284
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.9 bits (59), Expect = 4.2
Identities = 21/73 (28%), Positives = 28/73 (38%)
Query: 520 TIEARHVRRKQLHQYLSASLLCRRERTASGNKRKPDGALTHPPKKSKRLSESSNGSANGT 579
T E H R L ++S+L N R+P A + + E A
Sbjct: 36 TFEKAHRRSLTLLSSFTSSMLELPNNGKEENHRRPSVARSSSDRSKASAKEDLFSEAFRM 95
Query: 580 AETPKADASTSST 592
AE P A+A T ST
Sbjct: 96 AEQPPAEALTIST 108
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 321 DRYHLMPIITPAYPQQNSTFNVSASTRTI 349
D PI+ +YP+ S FNVSAS +T+
Sbjct: 29 DNIDKKPILVASYPE-GSRFNVSASIKTL 56
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 564 KSKRLSESSNGSANGTAETPKADASTSSTIACT 596
+SK LSE N A TA+ P D + SS + T
Sbjct: 443 RSKYLSEGKNSKAKYTAKQPSYDRAGSSLASPT 475
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 141 DYFLT--FYDLLKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFAR 185
DY L Y L + + KD A++ ++ NF GI+ +L++R
Sbjct: 155 DYTLVQAVYSSLVKHREQKDWNALKSVLDVCVRSNFGGIDSSMLYSR 201
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 9.8
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 527 RRKQLHQYLSASL-LCRRERTASGNKRKPDGALTHPPKKSKRLSESSNGSANGTAETPKA 585
R Q Y S S+ TAS K+ P A P + + R S +S+G ++ T+ P
Sbjct: 195 RVSQNSSYASGSVPAATAASTASPVKKPPPPAPPKPRRLAARTSSNSSGVSSPTSVPPPV 254
Query: 586 DAST 589
+T
Sbjct: 255 QRNT 258
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 544 ERTASGNKRKPDGALTHPPKKSKRLSESSNGSANGTAETPKAD 586
ER A + + P K + R + + NG++NG A +D
Sbjct: 30 ERNAKSSHGSINSRSASPNKATSRRNRAQNGNSNGRASVDNSD 72
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 420 RNQHIT-IAHVNPECYNSVPLNTNN 443
+NQHIT + HV+P+ + L+TNN
Sbjct: 288 QNQHITTVDHVHPQVSMTPSLSTNN 312
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.134 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,318
Number of Sequences: 5004
Number of extensions: 126590
Number of successful extensions: 329
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 16
length of query: 596
length of database: 2,362,478
effective HSP length: 77
effective length of query: 519
effective length of database: 1,977,170
effective search space: 1026151230
effective search space used: 1026151230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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