Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000084-TA|BGIBMGA000084-PA|IPR007012|Poly(A) polymerase,
central region, IPR002934|DNA polymerase, beta-like region,
IPR007010|Poly(A) polymerase, RNA-binding region, IPR011068|Poly(A)
polymerase, C-terminal-like
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0143 + 7144112-7144252,7144370-7144447,7144921-7145028,714... 390 e-108
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 365 e-101
04_04_0960 + 29704009-29705679 359 3e-99
06_02_0139 + 12247051-12247155,12247250-12247327,12247412-122475... 337 1e-92
07_03_1749 + 29201116-29201193,29201294-29201371,29201442-292015... 186 6e-47
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714... 136 4e-32
02_02_0414 + 9972157-9972257,9972925-9973003,9973657-9973755,997... 33 0.49
01_06_1241 + 35675596-35675918,35676459-35676804,35676864-35676866 31 2.6
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250... 31 3.4
02_04_0018 - 18943015-18943734 31 3.4
11_01_0672 - 5485017-5485111,5485187-5485408,5488704-5488893,548... 30 4.6
09_04_0526 + 18332915-18333605,18335044-18335242,18335914-18336751 30 4.6
11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553... 30 6.0
07_01_0303 - 2171796-2172611,2173133-2174062,2174659-2175132,217... 30 6.0
03_05_0376 - 23598026-23598136,23598395-23598484,23598870-235989... 30 6.0
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661... 30 6.0
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 30 6.0
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184... 29 8.0
03_06_0622 - 35151980-35152492 29 8.0
>02_02_0143 +
7144112-7144252,7144370-7144447,7144921-7145028,
7146170-7146232,7146313-7146474,7146901-7147014,
7147093-7147155,7147268-7147600,7147679-7147843,
7147992-7148597
Length = 610
Score = 390 bits (961), Expect = e-108
Identities = 189/401 (47%), Positives = 259/401 (64%), Gaps = 3/401 (0%)
Query: 34 GMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIRDES 93
G +S A P D+ KT +L+ L G++E E E R EVL + ++V++W++ +
Sbjct: 24 GADPPLSLAMPTVADLHKTAELEKFLVEAGLYEGEEESAKREEVLREIDQIVKEWVKKVT 83
Query: 94 LRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCD-YFLTFYDLLKQ 152
++K + ++TFGSYRLGVH GADIDALC+ P +++R + +F+ Y L +
Sbjct: 84 IQKGYSEQMVKEANAVLFTFGSYRLGVHGPGADIDALCIGPSYVKREEEFFVMLYGALSE 143
Query: 153 QPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKCVR 212
+V +L+ V DA VPV+K F G+ IDLL+A ++L IP FD+ +L ++D+ VR
Sbjct: 144 MEEVTELQPVPDAHVPVMKFKFRGLPIDLLYASVSLPVIPPDFDISQGSVLCDVDEATVR 203
Query: 213 SLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTCQL 272
SLNGCRV D+ILRLVPN FR TLR +K WA+R G+YSN G LGGVSWA+LVAR CQL
Sbjct: 204 SLNGCRVADQILRLVPNAEIFRKTLRCLKYWAQRRGVYSNVTGLLGGVSWALLVARVCQL 263
Query: 273 YPNALPATLVHKFFLVFSQWKWPQPVLLKQPDH-VNLGFPVWDPRVNVADRYHLMPIITP 331
YPNA+P+ LV +FF VF+QW+WP PV+L ++ NLGF VWDPR N DR H+MPIITP
Sbjct: 264 YPNAVPSMLVSRFFRVFTQWQWPNPVMLCAIENDDNLGFAVWDPRKNPRDRSHVMPIITP 323
Query: 332 AYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIVLL 391
AYP NS++NVS ST +IME+F+ G + EI L K W LFE FF Y ++V+
Sbjct: 324 AYPCMNSSYNVSTSTLRVIMEQFQFGNKICQEIELNKASWSSLFEPFQFFEAYTRYLVVD 383
Query: 392 ASSASADDQLQWCGLIESKIRHLIATLERN-QHITIAHVNP 431
+ DD W G IES++R L +ER+ + + H NP
Sbjct: 384 IVADDDDDLRLWKGWIESRLRQLTLKIERDTKGMLQCHPNP 424
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 365 bits (898), Expect = e-101
Identities = 176/398 (44%), Positives = 253/398 (63%), Gaps = 3/398 (0%)
Query: 27 QQNLKTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVR 86
+Q K G+T IS A P +D++KT +L+ L G++ES E R EVLG L ++V+
Sbjct: 14 EQPQKQYGITKPISLAEPAEVDLQKTAELEKFLVEAGLYESPEESARREEVLGELDKIVK 73
Query: 87 QWIRDESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERC-DYFLT 145
W++ + ++ + + ++TFGSYRLGVH GADID LCV P ++ R D+F+
Sbjct: 74 DWVKQLTSQRGYTDQMVEEANAVLFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIV 133
Query: 146 FYDLLKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKN 205
+D+L Q +V +L+ V DA VPV+K F GI IDLL+A ++L +P D+ +L +
Sbjct: 134 LHDILAQTEEVTELQPVPDAHVPVMKFKFHGISIDLLYASVSLLVVPPDLDISQGSVLYD 193
Query: 206 LDQKCVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAML 265
+D+ VRSLNGCRV D+ILRLVPN+ + L + +I L + + G+LGGV+WA+L
Sbjct: 194 VDEVTVRSLNGCRVADQILRLVPNVEDSSLMM-SICLMVELSN-NAKVTGFLGGVNWALL 251
Query: 266 VARTCQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHL 325
VAR CQLYPNA+P+ LV +FF VF+QW+WP PV+L + LGFPVWDPR DR H
Sbjct: 252 VARVCQLYPNAVPSMLVSRFFRVFTQWQWPNPVMLCAIEEDELGFPVWDPRKYHRDRSHH 311
Query: 326 MPIITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYK 385
MPIITPAYP NS++NVS ST ++ME+F+ G + EI + K W LFE FF YK
Sbjct: 312 MPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNKICQEIDISKANWSALFEPFQFFEAYK 371
Query: 386 HFIVLLASSASADDQLQWCGLIESKIRHLIATLERNQH 423
+++ + + +D W G +ES++R L +ER+ +
Sbjct: 372 NYLQVDIIAEDGEDLRLWKGWVESRLRQLTLKIERDTY 409
Score = 29.9 bits (64), Expect = 6.0
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 475 HCSMWFIGLVF-EKTNVNVDLTYDISSFTKAVLYQAENTNMLREGLTIEARHVRRKQLHQ 533
HC+ +F+GL E + +DI + R G+ + HVRRKQ+
Sbjct: 430 HCA-FFMGLSRKEGAKIQEGQQFDIRGTVDEFRHDIGMYGYWRPGMELAVSHVRRKQIPS 488
Query: 534 YLSASLLCRRERTASGNKR-KPDGALTHPPKKSKRLSESSNGSANGTAE-TPKADASTS 590
Y+ G KR +P + HP + +K ++ +G+AN + + PK T+
Sbjct: 489 YV----------FPEGYKRPRPSRHINHPQQSNK--NDVEDGTANRSPDGQPKRKHDTA 535
>04_04_0960 + 29704009-29705679
Length = 556
Score = 359 bits (883), Expect = 3e-99
Identities = 216/571 (37%), Positives = 303/571 (53%), Gaps = 44/571 (7%)
Query: 28 QNLKTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQ 87
Q+ ++ G+ IS GP P D+E T L+ L G++ES E R EVL L +V +
Sbjct: 4 QSPQSRGVAEPISLVGPTPADLESTARLERLLREEGLYESAEETAAREEVLRGLRGVVDR 63
Query: 88 WIRDESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCD--YFLT 145
W++ + ++ P +AD + FGSYRLGVH RG+DIDAL V P +++ CD +F
Sbjct: 64 WVKRLTRQRGYPDGMADRATALVLPFGSYRLGVHGRGSDIDALVVGPSYVD-CDRDFFGA 122
Query: 146 FYDLLKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKN 205
L + V +L+ V A VPVIKM F G+++DL++A + L +P DL +L+
Sbjct: 123 LATALAETAAVAELQPVPGAHVPVIKMRFHGVQVDLVYAGVCLPVVPGDLDLSGRSVLRG 182
Query: 206 LDQKCVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAML 265
LD RSLNG RV DEILRLVP+ FR TLR +K WAK G+YSN G+LGGV WA+L
Sbjct: 183 LDLATARSLNGVRVADEILRLVPDATAFRTTLRCVKHWAKARGVYSNVAGFLGGVGWAIL 242
Query: 266 VARTCQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDH----VNLGFPVWDPRVNVAD 321
VA C LYPNA P+ L+ +FF VF++WKWP PV+L+ +H + L PVWDPR N D
Sbjct: 243 VACVCLLYPNASPSMLLPRFFRVFARWKWPSPVMLRAIEHDDGELGLSLPVWDPRRNPRD 302
Query: 322 RYHLMPIITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIML---GKCGWERLFEAP 378
+ HLMPI+TPAYP NS +NVS +T +I E+ +G AV EI+ G GW++LF+
Sbjct: 303 KIHLMPIVTPAYPCMNSGYNVSHATLRVITEQLAVGDAVCQEIVKAGSGGGGWDKLFQPF 362
Query: 379 NFFSRYKHFIVL--LASSASADDQLQWCGLIESKIRHLIATLERNQH-ITIAHVNPECYN 435
NFF YK ++ + + DD +W G +ES++R L A +E + + + H++P
Sbjct: 363 NFFGAYKSYLQVDVTVTGGEEDDLREWKGWVESRLRLLSARVEADTSGMLLCHLHP---- 418
Query: 436 SVPLNTNNGQPLALPPGSTIPRETSPELNKNDKGEVVVNHCSMWFIGLVFEKTNVNVDL- 494
QP A P + PR S +F+GL
Sbjct: 419 ---------QPYAAEPHNE-PRRR--------------RRTSSFFVGLSKPPAQPQQQQH 454
Query: 495 -TYDISSFTKAVLYQAENTNMLREGLTIEARHVRRKQLHQYLSASLLCRRER-TASGNKR 552
+D+ + T+ + + R G+ + HVRRK L Y+ LL R KR
Sbjct: 455 QLFDLRATTEGFKEEVYMYDYWRPGMEVAVAHVRRKDLPSYVLRQLLRSPGRHDQLKRKR 514
Query: 553 KPDGALTHPPKKSKRLSESSNGSANGTAETP 583
D + P S SS+ A A P
Sbjct: 515 ADDDPSSSPAASDHSASSSSSRDAKRPAAAP 545
>06_02_0139 +
12247051-12247155,12247250-12247327,12247412-12247519,
12247882-12247944,12248024-12248185,12248424-12248624,
12248663-12248725,12248915-12249244,12249870-12250034,
12250110-12251078
Length = 747
Score = 337 bits (829), Expect = 1e-92
Identities = 179/441 (40%), Positives = 260/441 (58%), Gaps = 33/441 (7%)
Query: 33 LGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIRDE 92
LG+T IS +GP D+ +T +++ L G++ES+ E R EVLG L ++V+ WI+
Sbjct: 11 LGVTEPISLSGPTEKDVVRTQEVEKCLADAGLYESQEEAVSREEVLGKLDQIVKAWIKKA 70
Query: 93 SLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFL-TFYDLLK 151
+ I+TFGSYRLGVH GADID LCV PRH R +YF YD+L
Sbjct: 71 TRASGFGDQFVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRTEYFFQALYDMLV 130
Query: 152 QQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLR--------DDMLL 203
P+V +L V DA VPV+K +G+ IDLL+A L IP+ DL D+ +
Sbjct: 131 DMPEVTELHPVPDAHVPVLKFKLNGVSIDLLYANLTHVVIPEDLDLSHDSILHNVDEQTV 190
Query: 204 KNLD-----QKCVRSL------NGCRV--TDEILRLVPNI--------NNFRLTLRAIKL 242
++L+ K +R + C V +D++L + I + FR TLR ++
Sbjct: 191 RSLNGCRVTDKILRLVPNILVCTSCIVYFSDDMLNALWWIRYDGRLFASTFRTTLRFMRF 250
Query: 243 WAKRHGIYSNTLGYLGGVSWAMLVARTCQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQ 302
WAKR G+YSN +G+LGG++WA+LVAR CQLYPNA P+ L+ +FF V+S+WKWP PV+L
Sbjct: 251 WAKRRGVYSNVIGFLGGINWALLVARICQLYPNASPSMLISRFFKVYSKWKWPNPVMLCH 310
Query: 303 PDHVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTD 362
+ +LG VWDPR N DR H MPIITPAYP NS++NVS STR ++++EF +
Sbjct: 311 IEEGSLGLLVWDPRRNFRDRGHHMPIITPAYPSMNSSYNVSISTRHVMVQEFTRASDICQ 370
Query: 363 EIMLGKCGWERLFEAPNFFSRYKHFIVLLASSASADDQLQWCGLIESKIRHLIATLER-N 421
I K W+ LFE FF Y++++ + ++ + DD W G +ES++R L+ +ER
Sbjct: 371 AIDERKADWDALFEPYPFFESYRNYLKIEITARNEDDLRNWKGWVESRLRTLVLKIERFT 430
Query: 422 QHITIAHVNPECY--NSVPLN 440
+ + ++H NP + +S PL+
Sbjct: 431 REMLLSHPNPRDFIDSSRPLH 451
>07_03_1749 +
29201116-29201193,29201294-29201371,29201442-29201540,
29202958-29203020,29203101-29203298,29203359-29203472,
29203744-29203806,29203912-29204208,29204774-29204935,
29205061-29205244,29205771-29205820
Length = 461
Score = 186 bits (452), Expect = 6e-47
Identities = 121/386 (31%), Positives = 192/386 (49%), Gaps = 28/386 (7%)
Query: 47 IDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIRDESLRKNMPPSVADTV 106
+D +T L L G S R +V+ L+++V W + + + +PP A
Sbjct: 16 MDSRRTTSLLQFLKDEGGIPSPEADKKREQVIRKLNKIVMDWAKVVAYEQRVPPRRATAT 75
Query: 107 GGNIYTFGSYRLGVHHRGADIDALCVAPRHIE-RCDYFLTFYDLLKQQPQVKDLRAVEDA 165
+ T+GSY LG H +DIDALCV P + +F+ +L+ +P+V +L+ VE A
Sbjct: 76 ---VLTYGSYTLGAHGPESDIDALCVGPCIATLQYHFFIVLRQILEDRPEVSELQTVESA 132
Query: 166 FVPVIKMNFDGIEIDLLFARLALKEIPDS------------FDLRDDMLLKNLDQKCVRS 213
VP+++ F GI +D +A+L + + ++ + LL+ LD RS
Sbjct: 133 KVPLMRFRFSGISVDFTYAQLPVIDASEASLFCNQYVVTRAIITSNPHLLQKLDSLSWRS 192
Query: 214 LNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTCQLY 273
L+G RV ++I++LVPN F++ LR IKLWAKR GI+ + LG+ G+ A+L A CQ Y
Sbjct: 193 LSGVRVNEQIVQLVPNAQKFQILLRCIKLWAKRRGIHCHLLGFFAGIHLAILAAYVCQRY 252
Query: 274 PNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPIITPAY 333
P L FF +F+ W W PV L G P R + + MPI+ P
Sbjct: 253 PYGTINGLFTIFFDIFAHWNWQIPVSLH-------GQPTNCRRPDGS----FMPILLPCT 301
Query: 334 PQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIVLLAS 393
P + T N++ T I EE G A+T E W LF + ++Y+ F+ +
Sbjct: 302 PPEFCTSNMTKGTFKKIREELMRGYALTKEPWRHDFEWVWLFAPFPYATKYEEFLRIALC 361
Query: 394 SASADDQLQWCGLIESKIRHLIATLE 419
+ ++++ W G ++S+ +LI LE
Sbjct: 362 APTSEELRDWAGWVKSRF-NLILKLE 386
>03_02_0786 -
11169820-11170158,11170245-11170433,11171173-11171469,
11171568-11171630,11171884-11171997,11173011-11173091,
11173176-11173307,11174265-11174363,11174453-11174530,
11174641-11174901
Length = 550
Score = 136 bits (330), Expect = 4e-32
Identities = 110/395 (27%), Positives = 185/395 (46%), Gaps = 37/395 (9%)
Query: 39 ISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIRDESLRKNM 98
+ A + D ++ L ++ GV S E R V+ L ++V W + + +
Sbjct: 69 LDPAAAERTDAFRSKSLLNFISRTGVLPSPEEELKRQVVVRELDKIVMGWAK--RVAYDQ 126
Query: 99 PPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTF-----YDLLKQQ 153
+T + TFGSY LG +I + + +C + D +
Sbjct: 127 REQYWNTTA-TVLTFGSYALGEFP--FEIFNISYCDKRCLKCSALKAYGPESDIDAVCVG 183
Query: 154 PQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKCVRS 213
P + L+ F+ + +M + E+ L + K I +FD R LL +++ R
Sbjct: 184 PCIASLQ--HHFFIVLRQMLEERPEVSDLHSIENAKAI-HAFDPR---LLAAVNEPSWRC 237
Query: 214 LNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTCQLY 273
L+G RV +I++L+PNI F++ LR +KLWA++ G++ + LG+ G+ A+L A C ++
Sbjct: 238 LSGVRVNRQIMQLLPNIKKFQILLRCLKLWARKRGLHCHLLGFFAGIHLAILAAFVCIMH 297
Query: 274 PNALPATLVHKFFLVFSQWKWPQPV-LLKQPDHVNLGFPVWDPRVNVADRYHLMPIITPA 332
P+A ++L + FF +FS W WP PV LL QP W P MPI+ P
Sbjct: 298 PHATLSSLFNSFFDIFSHWHWPLPVSLLDQP-------TPWRPHC-----CSFMPIVMPC 345
Query: 333 YPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIML--------GKCGWERLFEAPNFFSRY 384
P + +++ ST I EE + G A+T + G W LF + RY
Sbjct: 346 SPPEFCASSITRSTFNKIKEELQRGFALTKLGVCTVEQGDRNGDINWTELFAPFPYTVRY 405
Query: 385 KHFIVLLASSASADDQLQWCGLIESKIRHLIATLE 419
KHF+ ++ S+ A++ W G ++S+ R+L+ LE
Sbjct: 406 KHFLRIVLSAPVAEELRDWVGWVKSRFRNLLLKLE 440
>02_02_0414 +
9972157-9972257,9972925-9973003,9973657-9973755,
9973848-9973913,9974225-9974376,9974503-9974584,
9974696-9974781,9974919-9975098,9975320-9975717,
9976192-9976790,9977141-9977239
Length = 646
Score = 33.5 bits (73), Expect = 0.49
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 450 PPGSTIPRETSPELNKNDKGEVVVNHCSMWFIGLVFE-----KTNVNVDLTYDISSFTKA 504
PPGS++P S L + +++ S L + V VDL S+ +
Sbjct: 154 PPGSSVPDLPSLSLAEIQNARGIMDVLSEMLNALDPSNREGLRQEVIVDLVDQCRSYKQR 213
Query: 505 VLYQAENTN---MLREGLTIEARHVRRKQLHQYLSASLLCRRERTASGNKRKPDGALTHP 561
V+ T+ +L +GL++ R H ++A + R E+T S + K D +
Sbjct: 214 VVELVNTTSNEELLSQGLSLNDDLQRVLAKHDAIAAGVAVRLEKTKS-LQTKIDSSPPAN 272
Query: 562 PKKSKRLSESSNGSANGTAETP---KADASTSS 591
P SK +SS+G+A+ + ++ A AS+SS
Sbjct: 273 PGTSKAPVQSSSGTASASNQSTLALPAPASSSS 305
>01_06_1241 + 35675596-35675918,35676459-35676804,35676864-35676866
Length = 223
Score = 31.1 bits (67), Expect = 2.6
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 222 EILRLVPNINNFRLTLRAIKLWA-KRHGIYSNTLGYLGGVSWAMLVAR 268
++ R +P RL R +K W H + LG +GG W + VA+
Sbjct: 101 DLTRGIPRFYIMRLEKRPLKFWTITHHASVTQCLGSIGGEDWYLGVAK 148
>08_01_0304 -
2502760-2502774,2502844-2502921,2503035-2503103,
2503200-2503289,2503400-2503517,2505548-2505678,
2505756-2506025,2507175-2507308,2507635-2508088
Length = 452
Score = 30.7 bits (66), Expect = 3.4
Identities = 18/57 (31%), Positives = 23/57 (40%)
Query: 536 SASLLCRRERTASGNKRKPDGALTHPPKKSKRLSESSNGSANGTAETPKADASTSST 592
+ S+ R R + R G PKK KR ES+ SA PK + ST
Sbjct: 38 AGSVTRSRARDTTERARASGGGTALDPKKRKRTEESAASSAAAAGPVPKKMTTAGST 94
>02_04_0018 - 18943015-18943734
Length = 239
Score = 30.7 bits (66), Expect = 3.4
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 409 SKIRHLIATLERNQHITIAHVNP-ECYNSVPLNTNNGQPLALPPGSTIPRETSPELNKND 467
+K RH + T + + +A+ TN P LPPGS++ SP+L+ ND
Sbjct: 60 TKERHWLGTFDTAEEAAVAYDRAARTIRGAAARTNFAYP-DLPPGSSLTPYLSPDLSTND 118
>11_01_0672 -
5485017-5485111,5485187-5485408,5488704-5488893,
5488974-5489078,5489291-5489569,5489979-5490227
Length = 379
Score = 30.3 bits (65), Expect = 4.6
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 477 SMWFIGLVFEKTNVNVDLTYDISSFTKAVLYQAENTNMLREGLTIEARHVRRKQLH 532
+ W + + +K+ V + T IS TK+++ EN N+L + + + ++H++ ++H
Sbjct: 188 NFWALACILKKSPVLENFTLQISKDTKSMIETEENYNVLVKPV-VTSKHLKVVKVH 242
>09_04_0526 + 18332915-18333605,18335044-18335242,18335914-18336751
Length = 575
Score = 30.3 bits (65), Expect = 4.6
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 323 YHLMPIITPAYPQQNSTFNVSASTRTIIMEEFRLGLA 359
+H P++ PAYPQ + V+A+ R + E + LG+A
Sbjct: 414 FHPRPLV-PAYPQPHFPSQVNAAHRQVPPEHYPLGIA 449
>11_01_0678 -
5534879-5534883,5535430-5535529,5535638-5535799,
5536000-5536966,5537444-5537561,5538682-5538871,
5538952-5539107,5539296-5540315
Length = 905
Score = 29.9 bits (64), Expect = 6.0
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 477 SMWFIGLVFEKTNVNVDLTYDISSFTKAVLYQAENTNMLREGLTIEARHVRRKQLH 532
+ W + + E + V LT IS K+++ EN N LR+ I + H++ ++H
Sbjct: 369 NFWALACILEHSPVLRKLTLQISKEAKSMMQTEENDNPLRKPAAI-SEHLKVVKVH 423
>07_01_0303 -
2171796-2172611,2173133-2174062,2174659-2175132,
2175569-2175609,2176298-2176337
Length = 766
Score = 29.9 bits (64), Expect = 6.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 427 AHVNPECYNSVPLNTNNGQPLALPPG--STIPRETSPELNKNDKGEVVVN 474
A+V PE + +P N + LPP + +P SPE+ + EV+VN
Sbjct: 625 ANVPPETLSKIPANVSPDVLANLPPDVLAKLPANVSPEMLADMPPEVLVN 674
>03_05_0376 -
23598026-23598136,23598395-23598484,23598870-23598935,
23599743-23599811,23599890-23599998,23600135-23600232,
23600339-23600420,23601163-23601242,23601346-23601516,
23601671-23601735,23601842-23601986,23602072-23602245,
23602498-23602572,23602831-23602959,23603295-23603432,
23603509-23603610,23604008-23604112,23604282-23604399,
23605752-23605909,23606159-23606261,23606515-23606582,
23606940-23607016,23608635-23608806
Length = 834
Score = 29.9 bits (64), Expect = 6.0
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 392 ASSASADDQLQWCGLIESKIRHL---IATLE-RNQHITIAHVN 430
A+SA+ DD +W + K+RH+ IA++E RN + + VN
Sbjct: 239 AASATVDDMDEWLRIFNMKLRHMREDIASIESRNNGLEMQSVN 281
>03_02_0232 +
6614784-6614882,6616145-6616477,6616708-6616967,
6617328-6617469,6617567-6617938,6618056-6618187,
6618907-6619035,6619125-6621188
Length = 1176
Score = 29.9 bits (64), Expect = 6.0
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 104 DTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLLKQQPQVKDLRAVE 163
D GG+ + S RL + RG C CD + F+ L ++ ++ LR E
Sbjct: 162 DACGGSGRGWISQRLASYSRGYGTRETCALHTARLSCDTLVDFWSALSEETRLSLLRMKE 221
Query: 164 DAFVPVIKMNFD 175
+ F+ + F+
Sbjct: 222 EDFMERLMRRFE 233
>02_01_0055 +
410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 29.9 bits (64), Expect = 6.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 144 LTFYDLLKQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLL 182
L+ D + +PQ K+ RA +A + VI+ F G +D+L
Sbjct: 108 LSLTDDVVYKPQTKETRAAYEALLSVIQQQFGGQPLDVL 146
>07_03_1690 -
28716998-28717091,28717203-28717897,28718264-28718446,
28718552-28719585,28719805-28719978,28720051-28720168,
28720339-28720521,28720647-28720739,28720981-28721166,
28722247-28722507
Length = 1006
Score = 29.5 bits (63), Expect = 8.0
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 425 TIAHVNPECYNSVPLNTNNGQPLALPPGSTIPRETSPELNKNDKGEVVVNH 475
T VN C +V L + LALPP E SP ++ ++V H
Sbjct: 625 TEVQVNAVCQQNVALPSGTNNRLALPPSPVADSEKSPVSPLHNTVDIVGTH 675
>03_06_0622 - 35151980-35152492
Length = 170
Score = 29.5 bits (63), Expect = 8.0
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 514 MLREGLTIEARHVRRKQL--HQYLSASLLCRRERTA----SGNKRKPDGALTHP--PKKS 565
M GL +A KQ+ Y S +C RTA SG+KRK D + HP P S
Sbjct: 1 MTEYGLDDDATDGADKQVLCKVYRSPRAVCAEARTAAAKCSGSKRKADDGVDHPEAPPPS 60
Query: 566 KRLSESSNGS 575
R + GS
Sbjct: 61 ARPRQEEAGS 70
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.134 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,949,714
Number of Sequences: 37544
Number of extensions: 776142
Number of successful extensions: 1870
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1837
Number of HSP's gapped (non-prelim): 29
length of query: 596
length of database: 14,793,348
effective HSP length: 86
effective length of query: 510
effective length of database: 11,564,564
effective search space: 5897927640
effective search space used: 5897927640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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