Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000084-TA|BGIBMGA000084-PA|IPR007012|Poly(A) polymerase,
central region, IPR002934|DNA polymerase, beta-like region,
IPR007010|Poly(A) polymerase, RNA-binding region, IPR011068|Poly(A)
polymerase, C-terminal-like
(596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33015| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 3e-46
SB_26719| Best HMM Match : No HMM Matches (HMM E-Value=.) 161 1e-39
SB_57678| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 4e-08
SB_10634| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 4e-08
SB_47099| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.0
SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.0
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.5
SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.5
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 6.1
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.1
SB_44107| Best HMM Match : IncA (HMM E-Value=0.18) 29 8.0
SB_31931| Best HMM Match : Nucleoplasmin (HMM E-Value=1.9) 29 8.0
SB_28703| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-36) 29 8.0
>SB_33015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 659
Score = 183 bits (446), Expect = 3e-46
Identities = 94/148 (63%), Positives = 108/148 (72%), Gaps = 18/148 (12%)
Query: 98 MPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLLKQQPQVK 157
MP +VA TVGG I+TFGS+RLGVH +GA ID L VAP HI+R D+F +FYDLLK P V+
Sbjct: 1 MPENVAKTVGGKIFTFGSFRLGVHTKGAYIDTLLVAPLHIDRADFFSSFYDLLKNHPDVR 60
Query: 158 DLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKCVRSLNGC 217
+LR +DLLFARL EIPD+ DL D+ LLKNLD KCVRSLNGC
Sbjct: 61 ELR------------------VDLLFARLFSPEIPDNLDLLDENLLKNLDPKCVRSLNGC 102
Query: 218 RVTDEILRLVPNINNFRLTLRAIKLWAK 245
RVTDEILR VPNI +FRLTLRA+KLWAK
Sbjct: 103 RVTDEILRQVPNIESFRLTLRAVKLWAK 130
Score = 165 bits (401), Expect = 9e-41
Identities = 78/136 (57%), Positives = 101/136 (74%), Gaps = 3/136 (2%)
Query: 318 NVADRYHLMPIITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEA 377
N DRYHLMPIITPAYPQQNSTFNVS STR I+ +EF +GL T++++ GK W+ LF
Sbjct: 188 NPGDRYHLMPIITPAYPQQNSTFNVSMSTRKIMCDEFFIGLKNTEDVISGKANWDILFTP 247
Query: 378 PNFFSRYKHFIVLLASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECYNSV 437
PNFF +YKH+IVL ASS + ++ L+W GL+ESK+R LI+ LE N++I +AHVNP+ Y
Sbjct: 248 PNFFHKYKHYIVLSASSNTEEEHLEWIGLVESKVRLLISYLENNEYIKLAHVNPKSYG-- 305
Query: 438 PLNTNNGQ-PLALPPG 452
PL++ Q LPPG
Sbjct: 306 PLDSEGKQLNQFLPPG 321
>SB_26719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 161 bits (391), Expect = 1e-39
Identities = 71/117 (60%), Positives = 92/117 (78%)
Query: 318 NVADRYHLMPIITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEA 377
N DRYHLMPIITPAYPQQNSTFNVS STR I+ +EF +GL T++++ GK W+ LF
Sbjct: 2 NPGDRYHLMPIITPAYPQQNSTFNVSMSTRKIMCDEFFIGLKNTEDVISGKANWDILFTP 61
Query: 378 PNFFSRYKHFIVLLASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECY 434
PNFF +YKH+IVL ASS + ++ L+W GL+ESK+R LI+ LE N++I +AHVNP+ Y
Sbjct: 62 PNFFHKYKHYIVLSASSNTEEEHLEWIGLVESKVRLLISYLENNEYIKLAHVNPKSY 118
>SB_57678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 57.2 bits (132), Expect = 4e-08
Identities = 24/36 (66%), Positives = 29/36 (80%)
Query: 125 ADIDALCVAPRHIERCDYFLTFYDLLKQQPQVKDLR 160
ADID L VAPRHI+R D+F +FYDLLK P V++LR
Sbjct: 2 ADIDTLLVAPRHIDRADFFSSFYDLLKNHPDVRELR 37
>SB_10634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 31
Score = 57.2 bits (132), Expect = 4e-08
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 217 CRVTDEILRLVPNINNFRLTLRAIKLWAK 245
CRVTDEILR VPNI +FRLTLRA+KLWAK
Sbjct: 2 CRVTDEILRQVPNIESFRLTLRAVKLWAK 30
>SB_47099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 31.5 bits (68), Expect = 2.0
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 457 RETSPELNKNDKGEVVVNHCSMWFIGLVFEKTNVNVDLTYDISSFTKAVLY--------Q 508
+ T PEL D V V H S+ E V TYD S F K +Y
Sbjct: 46 KTTVPELFYEDGRAVAVKHVSLTSSPKAVEDALVYAASTYDYSRFKKPDVYLVSGECRRY 105
Query: 509 AENTNMLREGLTIEARHV--RRKQLHQYLSASLLCRRERTASGNKRK 553
E +LR + A + RR L ++ SL+C+ R N ++
Sbjct: 106 EELAKILRRDKRVSAWMIDGRRTSLVDWVDTSLVCKTCRIIFDNAKQ 152
>SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 704
Score = 31.5 bits (68), Expect = 2.0
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 501 FTKAVLYQAENTNMLREGLTIEARHVRRKQLHQYLSASLLCRRERTASGNKRKPDGALTH 560
F K +LY E + H++RK+ + + R A+ N R+ G
Sbjct: 289 FEKELLYSLRPQTSTLEEPEEKTPHIKRKKFSSTKTETAPTSAPRLAASNLRRHIGTPVL 348
Query: 561 PPKKS--KRLSESSNGSANGTAETPKADASTSST 592
P + + + L S+ + A+ P+AD ST+S+
Sbjct: 349 PSRVNAMEFLKAKSSCPESNVAKQPEADGSTTSS 382
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 30.7 bits (66), Expect = 3.5
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 143 FLTFYDLLKQQ--PQVKDLRAVEDAFVPVIKMNFDGIEIDLL 182
F +F DL +Q PQ +A++ +P+ +++FD E+DLL
Sbjct: 1466 FFSFVDLFVEQSFPQELKAKALQYVIIPMFQVSFDLGEVDLL 1507
>SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1014
Score = 30.7 bits (66), Expect = 3.5
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 517 EGLTIEARHVRRKQLHQYLSASLLCRRERTASGNKRKPDGALTHPPKKSKRLSE-SSNGS 575
E LT A K +Q + L + E++ SG K+ + +E + NGS
Sbjct: 73 ESLTTSALGEDDKTTNQEGAPVLSSQSEQSTSGEKQNSQSQVQGESTNDNEENERNDNGS 132
Query: 576 ANGTAETPKADASTSSTIAC 595
+G T + A + ST+ C
Sbjct: 133 QSGEEATEQEKAKSGSTVCC 152
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 29.9 bits (64), Expect = 6.1
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 375 FEAPNFFSRYKHFIVLLASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECY 434
+ AP KH + +L +AS + + WC + L LE ++ + ++ +N Y
Sbjct: 1908 YAAPGVSYTIKHSVGILTQNASLANSITWCAEFNDSRQFL--QLEFSREVHVSGINTRYY 1965
Query: 435 NSVPL 439
S L
Sbjct: 1966 GSKTL 1970
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 29.9 bits (64), Expect = 6.1
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 551 KRKPDGALTHPPKKSKRLSESSNGSANGTA-ETPKADASTSS 591
+R P+ TH K KR+S++S T E P AD+ TSS
Sbjct: 1964 RRTPNKYATHTCNKYKRISQASTKDNKDTVNEGPMADSVTSS 2005
>SB_44107| Best HMM Match : IncA (HMM E-Value=0.18)
Length = 335
Score = 29.5 bits (63), Expect = 8.0
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 85 VRQWIRDESLRK--NMPPSVADTVGGNIYTF 113
++ WIRD+ R+ +M P+V ++GGN+ +F
Sbjct: 119 IQIWIRDDRGRRGTHMTPAVPASIGGNVQSF 149
>SB_31931| Best HMM Match : Nucleoplasmin (HMM E-Value=1.9)
Length = 165
Score = 29.5 bits (63), Expect = 8.0
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 409 SKIRHLIATLERNQHITIAHVNPE----CYNSVPLNTNNGQPLALPPGSTIPRETSPELN 464
+KI I NQ T+ N YNS+P+NTNN + L TI + P N
Sbjct: 38 NKIATAIIKNSNNQRTTLQEQNENNKKISYNSIPINTNNTNTMVLILIITINNKKPPFKN 97
>SB_28703| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-36)
Length = 397
Score = 29.5 bits (63), Expect = 8.0
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 472 VVNHCSMWFIGLVFEKTNVNVDLTYDISSFTKAVLYQAENTNMLREGLTIEARHVR-RKQ 530
VV+ SM+ + F + N D Y I+ FTK Y +N + R V R+
Sbjct: 261 VVSMLSMYCLQTCFPQDN---DTVYMIAEFTKWCHY----SNSAANAVVYAFRDVEMRRT 313
Query: 531 LHQYLSASLLCRRERTASGNKR---KPDGALTHP---PKKSKRLSESSNGSANGTAETPK 584
L + R E T+ + + D + +H P S++ E N +AN E P+
Sbjct: 314 FMSLLCPCIKPRVEPTSVDTNQLRTRHDSSYSHSIYNPPNSEKAQEQVNNNANILTERPE 373
Query: 585 ADASTSSTI 593
+ + S+ I
Sbjct: 374 VEENVSNII 382
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.134 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,797,864
Number of Sequences: 59808
Number of extensions: 892439
Number of successful extensions: 2036
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2030
Number of HSP's gapped (non-prelim): 15
length of query: 596
length of database: 16,821,457
effective HSP length: 86
effective length of query: 510
effective length of database: 11,677,969
effective search space: 5955764190
effective search space used: 5955764190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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