GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000084-TA|BGIBMGA000084-PA|IPR007012|Poly(A) polymerase,
central region, IPR002934|DNA polymerase, beta-like region,
IPR007010|Poly(A) polymerase, RNA-binding region, IPR011068|Poly(A)
polymerase, C-terminal-like
         (596 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    27   1.9  
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    27   1.9  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    25   7.5  
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    25   7.5  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    24   10.0 

>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 538 SLLCRRERTASGNKRKPDGALTHPPKKSKRLSESSNGSANGTAET-PKADASTSS 591
           S + R+ RTA GN+ +P  +  +    S+    +S GS   T  T PK+ AS++S
Sbjct: 469 STIRRQRRTALGNRDEPHSSSGNWSASSES-GRTSIGSEITTTNTHPKSSASSTS 522


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 538 SLLCRRERTASGNKRKPDGALTHPPKKSKRLSESSNGSANGTAET-PKADASTSS 591
           S + R+ RTA GN+ +P  +  +    S+    +S GS   T  T PK+ AS++S
Sbjct: 470 STIRRQRRTALGNRDEPHSSSGNWSASSES-GRTSIGSEITTTNTHPKSSASSTS 523


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 211 VRSLNGCRVTDEILRLVPNINNFRLTLRAIK----LWAKRHGI 249
           VRS  G  V DE+L ++ +  N   +++ ++    LW  R+ +
Sbjct: 850 VRSAEGRTVDDELLEIISDFKNNVFSIQEVEQLVTLWKNRNDV 892


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 100 PSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPR 135
           P++ D +GG++  F +Y L  H +  + + + +AP+
Sbjct: 107 PALRDILGGSVGFFNNYNL-CHMKSINWEEILLAPQ 141


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
          homolog protein.
          Length = 394

 Score = 24.2 bits (50), Expect = 10.0
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 6  PASQYSHTNTQPIKATNEYQNQQNLKTLGMTSAISTAGPKP 46
          PA  Y H +    +++ ++ + +N  T   TS   + GP P
Sbjct: 51 PAMYYPHPHVFHPQSSPDWSSHENFSTPPQTSLGLSHGPSP 91


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.134    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,991
Number of Sequences: 2123
Number of extensions: 26944
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 9
length of query: 596
length of database: 516,269
effective HSP length: 68
effective length of query: 528
effective length of database: 371,905
effective search space: 196365840
effective search space used: 196365840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)