Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000084-TA|BGIBMGA000084-PA|IPR007012|Poly(A) polymerase,
central region, IPR002934|DNA polymerase, beta-like region,
IPR007010|Poly(A) polymerase, RNA-binding region, IPR011068|Poly(A)
polymerase, C-terminal-like
(596 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY113434-1|AAM29439.1| 659|Drosophila melanogaster RE25878p pro... 730 0.0
BT001541-1|AAN71296.1| 659|Drosophila melanogaster RE09914p pro... 729 0.0
AF231704-1|AAF36978.1| 659|Drosophila melanogaster poly A polym... 729 0.0
AE013599-2939|ABI31107.1| 659|Drosophila melanogaster CG9854-PC... 729 0.0
AE013599-2938|AAM68424.1| 659|Drosophila melanogaster CG9854-PB... 729 0.0
AE013599-2937|AAF57528.2| 659|Drosophila melanogaster CG9854-PA... 729 0.0
AB018431-1|BAB03279.1| 659|Drosophila melanogaster poly A polym... 729 0.0
AB018430-1|BAB03278.1| 459|Drosophila melanogaster poly A polym... 466 e-131
AB018429-1|BAB03277.1| 255|Drosophila melanogaster poly A polym... 361 1e-99
AY553964-1|AAS90558.1| 766|Drosophila melanogaster pyramus prot... 35 0.37
AE013599-1341|AAF58624.2| 702|Drosophila melanogaster CG13194-P... 35 0.37
AE014298-1474|AAF46609.1| 624|Drosophila melanogaster CG15295-P... 34 0.64
AE014134-3561|AAN11140.1| 600|Drosophila melanogaster CG31601-P... 34 0.64
AY058370-1|AAL13599.1| 370|Drosophila melanogaster GH13855p pro... 33 1.5
AE014134-1571|AAF52717.1| 1857|Drosophila melanogaster CG9487-PA... 33 1.5
AE014298-834|AAF46115.2| 2016|Drosophila melanogaster CG5937-PA ... 32 2.6
AF165153-1|AAD51291.1| 669|Drosophila melanogaster DGP-1 protei... 31 3.4
>AY113434-1|AAM29439.1| 659|Drosophila melanogaster RE25878p
protein.
Length = 659
Score = 730 bits (1804), Expect = 0.0
Identities = 340/544 (62%), Positives = 421/544 (77%), Gaps = 6/544 (1%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K LGMTSAIS A P+P D+++T++L+ SL P+ VFES+ E++HRME+L L+ LV+QW++
Sbjct: 26 KQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFESQDELNHRMEILAKLNTLVKQWVK 85
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLL 150
+ S+ KNMP S A+ +GG IYTFGSYRLGVHH+GADIDALCVAPR+IER DYF +F+++L
Sbjct: 86 EISVSKNMPESAAEKLGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERTDYFQSFFEVL 145
Query: 151 KQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKC 210
K+QP+V + R+VE+AFVPVIKMNFDGIEIDLLFARL+LKEIPD FDLRDD LL+NLD +
Sbjct: 146 KKQPEVTECRSVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRNLDHRS 205
Query: 211 VRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTC 270
VRSLNGCRVTDEIL LVPNI NFRL LR IKLWAK+HGIYSN+LGY GGV+WAMLVARTC
Sbjct: 206 VRSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGVTWAMLVARTC 265
Query: 271 QLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPIIT 330
QLYPNA ATLVHKFFLVFS+WKWP PVLLK PD+VNL F VWDPRVN +DRYHLMPIIT
Sbjct: 266 QLYPNAAAATLVHKFFLVFSRWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHLMPIIT 325
Query: 331 PAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIVL 390
PAYPQQNSTFNVS ST+ +I+ EF G+ +TDEIMLG+ WERLFEAP+FF RY+HFIVL
Sbjct: 326 PAYPQQNSTFNVSESTKKVILTEFNRGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVL 385
Query: 391 LASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECYNSVPLNTNNGQPLALP 450
L +S +ADD L+WCGL+ESK+R LI+ LERN HI +AHVNP+C+ GQ
Sbjct: 386 LVNSQTADDHLEWCGLVESKVRLLISNLERNPHIALAHVNPKCF-----EFKKGQSANNS 440
Query: 451 PGSTIPRETSPELNKNDKGEVVVNHCSMWFIGLVFEKT-NVNVDLTYDISSFTKAVLYQA 509
++ + + N CSMWFIGL FE++ N+NVDLT I +FT+ V+
Sbjct: 441 QNNSGNEDDLKQSQGNQSAVTSAPFCSMWFIGLEFERSENLNVDLTESIQNFTEHVMMHG 500
Query: 510 ENTNMLREGLTIEARHVRRKQLHQYLSASLLCRRERTASGNKRKPDGALTHPPKKSKRLS 569
N ML+EG+TI+ARHV+RKQL YL + L R ++ + + L + + S L+
Sbjct: 501 VNIKMLKEGMTIDARHVKRKQLSLYLDSDFLKRERKSMESHNNFNNTLLANRKRLSTELA 560
Query: 570 ESSN 573
+S +
Sbjct: 561 QSQD 564
>BT001541-1|AAN71296.1| 659|Drosophila melanogaster RE09914p
protein.
Length = 659
Score = 729 bits (1803), Expect = 0.0
Identities = 340/544 (62%), Positives = 420/544 (77%), Gaps = 6/544 (1%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K LGMTSAIS A P+P D+++T++L+ SL P+ VFES+ E++HRME+L L+ LV+QW++
Sbjct: 26 KQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFESQDELNHRMEILAKLNTLVKQWVK 85
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLL 150
+ S+ KNMP S A+ +GG IYTFGSYRLGVHH+GADIDALCVAPR+IER DYF +F+++L
Sbjct: 86 EISVSKNMPESAAEKLGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERTDYFQSFFEVL 145
Query: 151 KQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKC 210
K+QP+V + R+VE+AFVPVIKMNFDGIEIDLLFARL+LKEIPD FDLRDD LL+NLD +
Sbjct: 146 KKQPEVTECRSVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRNLDHRS 205
Query: 211 VRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTC 270
VRSLNGCRVTDEIL LVPNI NFRL LR IKLWAK+HGIYSN+LGY GGV+WAMLVARTC
Sbjct: 206 VRSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGVTWAMLVARTC 265
Query: 271 QLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPIIT 330
QLYPNA ATLVHKFFLVFS+WKWP PVLLK PD+VNL F VWDPRVN +DRYHLMPIIT
Sbjct: 266 QLYPNAAAATLVHKFFLVFSRWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHLMPIIT 325
Query: 331 PAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIVL 390
PAYPQQNSTFNVS ST+ +I+ EF G+ +TDEIMLG+ WERLFEAP+FF RY+HFIVL
Sbjct: 326 PAYPQQNSTFNVSESTKKVILTEFNRGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVL 385
Query: 391 LASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECYNSVPLNTNNGQPLALP 450
L +S +ADD L+WCGL+ESK+R LI LERN HI +AHVNP+C+ GQ
Sbjct: 386 LVNSQTADDHLEWCGLVESKVRLLIGNLERNPHIALAHVNPKCF-----EFKKGQSANNS 440
Query: 451 PGSTIPRETSPELNKNDKGEVVVNHCSMWFIGLVFEKT-NVNVDLTYDISSFTKAVLYQA 509
++ + + N CSMWFIGL FE++ N+NVDLT I +FT+ V+
Sbjct: 441 QNNSGNEDDLKQSQGNQSAVTSAPFCSMWFIGLEFERSENLNVDLTESIQNFTEHVMMHG 500
Query: 510 ENTNMLREGLTIEARHVRRKQLHQYLSASLLCRRERTASGNKRKPDGALTHPPKKSKRLS 569
N ML+EG+TI+ARHV+RKQL YL + L R ++ + + L + + S L+
Sbjct: 501 VNIKMLKEGMTIDARHVKRKQLSLYLDSDFLKRERKSMESHNNFNNTLLANRKRLSTELA 560
Query: 570 ESSN 573
+S +
Sbjct: 561 QSQD 564
>AF231704-1|AAF36978.1| 659|Drosophila melanogaster poly A
polymerase protein.
Length = 659
Score = 729 bits (1803), Expect = 0.0
Identities = 340/544 (62%), Positives = 420/544 (77%), Gaps = 6/544 (1%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K LGMTSAIS A P+P D+++T++L+ SL P+ VFES+ E++HRME+L L+ LV+QW++
Sbjct: 26 KQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFESQDELNHRMEILAKLNTLVKQWVK 85
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLL 150
+ S+ KNMP S A+ +GG IYTFGSYRLGVHH+GADIDALCVAPR+IER DYF +F+++L
Sbjct: 86 EISVSKNMPESAAEKLGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERTDYFQSFFEVL 145
Query: 151 KQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKC 210
K+QP+V + R+VE+AFVPVIKMNFDGIEIDLLFARL+LKEIPD FDLRDD LL+NLD +
Sbjct: 146 KKQPEVTECRSVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRNLDHRS 205
Query: 211 VRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTC 270
VRSLNGCRVTDEIL LVPNI NFRL LR IKLWAK+HGIYSN+LGY GGV+WAMLVARTC
Sbjct: 206 VRSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGVTWAMLVARTC 265
Query: 271 QLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPIIT 330
QLYPNA ATLVHKFFLVFS+WKWP PVLLK PD+VNL F VWDPRVN +DRYHLMPIIT
Sbjct: 266 QLYPNAAAATLVHKFFLVFSRWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHLMPIIT 325
Query: 331 PAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIVL 390
PAYPQQNSTFNVS ST+ +I+ EF G+ +TDEIMLG+ WERLFEAP+FF RY+HFIVL
Sbjct: 326 PAYPQQNSTFNVSESTKKVILTEFNRGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVL 385
Query: 391 LASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECYNSVPLNTNNGQPLALP 450
L +S +ADD L+WCGL+ESK+R LI LERN HI +AHVNP+C+ GQ
Sbjct: 386 LVNSQTADDHLEWCGLVESKVRLLIGNLERNPHIALAHVNPKCF-----EFKKGQSANNS 440
Query: 451 PGSTIPRETSPELNKNDKGEVVVNHCSMWFIGLVFEKT-NVNVDLTYDISSFTKAVLYQA 509
++ + + N CSMWFIGL FE++ N+NVDLT I +FT+ V+
Sbjct: 441 QNNSGNEDDLKQSQGNQSAVTSAPFCSMWFIGLEFERSENLNVDLTESIQNFTEHVMMHG 500
Query: 510 ENTNMLREGLTIEARHVRRKQLHQYLSASLLCRRERTASGNKRKPDGALTHPPKKSKRLS 569
N ML+EG+TI+ARHV+RKQL YL + L R ++ + + L + + S L+
Sbjct: 501 VNIKMLKEGMTIDARHVKRKQLSLYLDSDFLKRERKSMESHNNFNNTLLANRKRLSTELA 560
Query: 570 ESSN 573
+S +
Sbjct: 561 QSQD 564
>AE013599-2939|ABI31107.1| 659|Drosophila melanogaster CG9854-PC,
isoform C protein.
Length = 659
Score = 729 bits (1803), Expect = 0.0
Identities = 340/544 (62%), Positives = 420/544 (77%), Gaps = 6/544 (1%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K LGMTSAIS A P+P D+++T++L+ SL P+ VFES+ E++HRME+L L+ LV+QW++
Sbjct: 26 KQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFESQDELNHRMEILAKLNTLVKQWVK 85
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLL 150
+ S+ KNMP S A+ +GG IYTFGSYRLGVHH+GADIDALCVAPR+IER DYF +F+++L
Sbjct: 86 EISVSKNMPESAAEKLGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERTDYFQSFFEVL 145
Query: 151 KQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKC 210
K+QP+V + R+VE+AFVPVIKMNFDGIEIDLLFARL+LKEIPD FDLRDD LL+NLD +
Sbjct: 146 KKQPEVTECRSVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRNLDHRS 205
Query: 211 VRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTC 270
VRSLNGCRVTDEIL LVPNI NFRL LR IKLWAK+HGIYSN+LGY GGV+WAMLVARTC
Sbjct: 206 VRSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGVTWAMLVARTC 265
Query: 271 QLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPIIT 330
QLYPNA ATLVHKFFLVFS+WKWP PVLLK PD+VNL F VWDPRVN +DRYHLMPIIT
Sbjct: 266 QLYPNAAAATLVHKFFLVFSRWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHLMPIIT 325
Query: 331 PAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIVL 390
PAYPQQNSTFNVS ST+ +I+ EF G+ +TDEIMLG+ WERLFEAP+FF RY+HFIVL
Sbjct: 326 PAYPQQNSTFNVSESTKKVILTEFNRGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVL 385
Query: 391 LASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECYNSVPLNTNNGQPLALP 450
L +S +ADD L+WCGL+ESK+R LI LERN HI +AHVNP+C+ GQ
Sbjct: 386 LVNSQTADDHLEWCGLVESKVRLLIGNLERNPHIALAHVNPKCF-----EFKKGQSANNS 440
Query: 451 PGSTIPRETSPELNKNDKGEVVVNHCSMWFIGLVFEKT-NVNVDLTYDISSFTKAVLYQA 509
++ + + N CSMWFIGL FE++ N+NVDLT I +FT+ V+
Sbjct: 441 QNNSGNEDDLKQSQGNQSAVTSAPFCSMWFIGLEFERSENLNVDLTESIQNFTEHVMMHG 500
Query: 510 ENTNMLREGLTIEARHVRRKQLHQYLSASLLCRRERTASGNKRKPDGALTHPPKKSKRLS 569
N ML+EG+TI+ARHV+RKQL YL + L R ++ + + L + + S L+
Sbjct: 501 VNIKMLKEGMTIDARHVKRKQLSLYLDSDFLKRERKSMESHNNFNNTLLANRKRLSTELA 560
Query: 570 ESSN 573
+S +
Sbjct: 561 QSQD 564
>AE013599-2938|AAM68424.1| 659|Drosophila melanogaster CG9854-PB,
isoform B protein.
Length = 659
Score = 729 bits (1803), Expect = 0.0
Identities = 340/544 (62%), Positives = 420/544 (77%), Gaps = 6/544 (1%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K LGMTSAIS A P+P D+++T++L+ SL P+ VFES+ E++HRME+L L+ LV+QW++
Sbjct: 26 KQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFESQDELNHRMEILAKLNTLVKQWVK 85
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLL 150
+ S+ KNMP S A+ +GG IYTFGSYRLGVHH+GADIDALCVAPR+IER DYF +F+++L
Sbjct: 86 EISVSKNMPESAAEKLGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERTDYFQSFFEVL 145
Query: 151 KQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKC 210
K+QP+V + R+VE+AFVPVIKMNFDGIEIDLLFARL+LKEIPD FDLRDD LL+NLD +
Sbjct: 146 KKQPEVTECRSVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRNLDHRS 205
Query: 211 VRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTC 270
VRSLNGCRVTDEIL LVPNI NFRL LR IKLWAK+HGIYSN+LGY GGV+WAMLVARTC
Sbjct: 206 VRSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGVTWAMLVARTC 265
Query: 271 QLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPIIT 330
QLYPNA ATLVHKFFLVFS+WKWP PVLLK PD+VNL F VWDPRVN +DRYHLMPIIT
Sbjct: 266 QLYPNAAAATLVHKFFLVFSRWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHLMPIIT 325
Query: 331 PAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIVL 390
PAYPQQNSTFNVS ST+ +I+ EF G+ +TDEIMLG+ WERLFEAP+FF RY+HFIVL
Sbjct: 326 PAYPQQNSTFNVSESTKKVILTEFNRGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVL 385
Query: 391 LASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECYNSVPLNTNNGQPLALP 450
L +S +ADD L+WCGL+ESK+R LI LERN HI +AHVNP+C+ GQ
Sbjct: 386 LVNSQTADDHLEWCGLVESKVRLLIGNLERNPHIALAHVNPKCF-----EFKKGQSANNS 440
Query: 451 PGSTIPRETSPELNKNDKGEVVVNHCSMWFIGLVFEKT-NVNVDLTYDISSFTKAVLYQA 509
++ + + N CSMWFIGL FE++ N+NVDLT I +FT+ V+
Sbjct: 441 QNNSGNEDDLKQSQGNQSAVTSAPFCSMWFIGLEFERSENLNVDLTESIQNFTEHVMMHG 500
Query: 510 ENTNMLREGLTIEARHVRRKQLHQYLSASLLCRRERTASGNKRKPDGALTHPPKKSKRLS 569
N ML+EG+TI+ARHV+RKQL YL + L R ++ + + L + + S L+
Sbjct: 501 VNIKMLKEGMTIDARHVKRKQLSLYLDSDFLKRERKSMESHNNFNNTLLANRKRLSTELA 560
Query: 570 ESSN 573
+S +
Sbjct: 561 QSQD 564
>AE013599-2937|AAF57528.2| 659|Drosophila melanogaster CG9854-PA,
isoform A protein.
Length = 659
Score = 729 bits (1803), Expect = 0.0
Identities = 340/544 (62%), Positives = 420/544 (77%), Gaps = 6/544 (1%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K LGMTSAIS A P+P D+++T++L+ SL P+ VFES+ E++HRME+L L+ LV+QW++
Sbjct: 26 KQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFESQDELNHRMEILAKLNTLVKQWVK 85
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLL 150
+ S+ KNMP S A+ +GG IYTFGSYRLGVHH+GADIDALCVAPR+IER DYF +F+++L
Sbjct: 86 EISVSKNMPESAAEKLGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERTDYFQSFFEVL 145
Query: 151 KQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKC 210
K+QP+V + R+VE+AFVPVIKMNFDGIEIDLLFARL+LKEIPD FDLRDD LL+NLD +
Sbjct: 146 KKQPEVTECRSVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRNLDHRS 205
Query: 211 VRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTC 270
VRSLNGCRVTDEIL LVPNI NFRL LR IKLWAK+HGIYSN+LGY GGV+WAMLVARTC
Sbjct: 206 VRSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGVTWAMLVARTC 265
Query: 271 QLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPIIT 330
QLYPNA ATLVHKFFLVFS+WKWP PVLLK PD+VNL F VWDPRVN +DRYHLMPIIT
Sbjct: 266 QLYPNAAAATLVHKFFLVFSRWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHLMPIIT 325
Query: 331 PAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIVL 390
PAYPQQNSTFNVS ST+ +I+ EF G+ +TDEIMLG+ WERLFEAP+FF RY+HFIVL
Sbjct: 326 PAYPQQNSTFNVSESTKKVILTEFNRGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVL 385
Query: 391 LASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECYNSVPLNTNNGQPLALP 450
L +S +ADD L+WCGL+ESK+R LI LERN HI +AHVNP+C+ GQ
Sbjct: 386 LVNSQTADDHLEWCGLVESKVRLLIGNLERNPHIALAHVNPKCF-----EFKKGQSANNS 440
Query: 451 PGSTIPRETSPELNKNDKGEVVVNHCSMWFIGLVFEKT-NVNVDLTYDISSFTKAVLYQA 509
++ + + N CSMWFIGL FE++ N+NVDLT I +FT+ V+
Sbjct: 441 QNNSGNEDDLKQSQGNQSAVTSAPFCSMWFIGLEFERSENLNVDLTESIQNFTEHVMMHG 500
Query: 510 ENTNMLREGLTIEARHVRRKQLHQYLSASLLCRRERTASGNKRKPDGALTHPPKKSKRLS 569
N ML+EG+TI+ARHV+RKQL YL + L R ++ + + L + + S L+
Sbjct: 501 VNIKMLKEGMTIDARHVKRKQLSLYLDSDFLKRERKSMESHNNFNNTLLANRKRLSTELA 560
Query: 570 ESSN 573
+S +
Sbjct: 561 QSQD 564
>AB018431-1|BAB03279.1| 659|Drosophila melanogaster poly A
polymerase protein.
Length = 659
Score = 729 bits (1803), Expect = 0.0
Identities = 340/544 (62%), Positives = 420/544 (77%), Gaps = 6/544 (1%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K LGMTSAIS A P+P D+++T++L+ SL P+ VFES+ E++HRME+L L+ LV+QW++
Sbjct: 26 KQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFESQDELNHRMEILAKLNTLVKQWVK 85
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLL 150
+ S+ KNMP S A+ +GG IYTFGSYRLGVHH+GADIDALCVAPR+IER DYF +F+++L
Sbjct: 86 EISVSKNMPESAAEKLGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERTDYFQSFFEVL 145
Query: 151 KQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKC 210
K+QP+V + R+VE+AFVPVIKMNFDGIEIDLLFARL+LKEIPD FDLRDD LL+NLD +
Sbjct: 146 KKQPEVTECRSVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRNLDHRS 205
Query: 211 VRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTC 270
VRSLNGCRVTDEIL LVPNI NFRL LR IKLWAK+HGIYSN+LGY GGV+WAMLVARTC
Sbjct: 206 VRSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGVTWAMLVARTC 265
Query: 271 QLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHLMPIIT 330
QLYPNA ATLVHKFFLVFS+WKWP PVLLK PD+VNL F VWDPRVN +DRYHLMPIIT
Sbjct: 266 QLYPNAAAATLVHKFFLVFSRWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHLMPIIT 325
Query: 331 PAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIVL 390
PAYPQQNSTFNVS ST+ +I+ EF G+ +TDEIMLG+ WERLFEAP+FF RY+HFIVL
Sbjct: 326 PAYPQQNSTFNVSESTKKVILTEFNRGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVL 385
Query: 391 LASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECYNSVPLNTNNGQPLALP 450
L +S +ADD L+WCGL+ESK+R LI LERN HI +AHVNP+C+ GQ
Sbjct: 386 LVNSQTADDHLEWCGLVESKVRLLIGNLERNPHIALAHVNPKCF-----EFKKGQSANNS 440
Query: 451 PGSTIPRETSPELNKNDKGEVVVNHCSMWFIGLVFEKT-NVNVDLTYDISSFTKAVLYQA 509
++ + + N CSMWFIGL FE++ N+NVDLT I +FT+ V+
Sbjct: 441 QNNSGNEDDLKQSQGNQSAVTSAPFCSMWFIGLEFERSENLNVDLTESIQNFTEHVMMHG 500
Query: 510 ENTNMLREGLTIEARHVRRKQLHQYLSASLLCRRERTASGNKRKPDGALTHPPKKSKRLS 569
N ML+EG+TI+ARHV+RKQL YL + L R ++ + + L + + S L+
Sbjct: 501 VNIKMLKEGMTIDARHVKRKQLSLYLDSDFLKRERKSMESHNNFNNTLLANRKRLSTELA 560
Query: 570 ESSN 573
+S +
Sbjct: 561 QSQD 564
>AB018430-1|BAB03278.1| 459|Drosophila melanogaster poly A
polymerase protein.
Length = 459
Score = 466 bits (1148), Expect = e-131
Identities = 220/369 (59%), Positives = 267/369 (72%), Gaps = 6/369 (1%)
Query: 206 LDQKCVRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAML 265
LD + VRSLNGCRVTDEIL LVPNI NFRL LR IKLWAK+HGIYSN+LGY GGV+WAML
Sbjct: 1 LDHRSVRSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGVTWAML 60
Query: 266 VARTCQLYPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFPVWDPRVNVADRYHL 325
VARTCQLYPNA ATLVHKFFLVFS+WKWP PVLLK PD+VNL F VWDPRVN +DRYH
Sbjct: 61 VARTCQLYPNAAAATLVHKFFLVFSRWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHP 120
Query: 326 MPIITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYK 385
MPIITPAYPQQNSTFNVS ST+ +I+ EF G+ +TDEIMLG+ WERLFEAP+FF RY+
Sbjct: 121 MPIITPAYPQQNSTFNVSESTKKVILTEFNRGMNITDEIMLGRIPWERLFEAPSFFYRYR 180
Query: 386 HFIVLLASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECYNSVPLNTNNGQ 445
HFIVLL +S +ADD L+WCGL+ESK+R LI LERN HI +AHVNP+C+ GQ
Sbjct: 181 HFIVLLVNSQTADDHLEWCGLVESKVRLLIGNLERNPHIALAHVNPKCF-----EFKKGQ 235
Query: 446 PLALPPGSTIPRETSPELNKNDKGEVVVNHCSMWFIGLVFEKT-NVNVDLTYDISSFTKA 504
++ + + N CSMWFIGL FE++ N+NVDLT I +FT+
Sbjct: 236 SANNSQNNSGNEDDLKQSQGNQSAVTSAPFCSMWFIGLEFERSENLNVDLTESIQNFTEH 295
Query: 505 VLYQAENTNMLREGLTIEARHVRRKQLHQYLSASLLCRRERTASGNKRKPDGALTHPPKK 564
V+ N ML+EG+TI+ARHV+RKQL YL + L R ++ + + L + +
Sbjct: 296 VMMHGVNIKMLKEGMTIDARHVKRKQLSLYLDSDFLKRERKSMESHNNFNNTLLANRKRL 355
Query: 565 SKRLSESSN 573
S L++S +
Sbjct: 356 STELAQSQD 364
>AB018429-1|BAB03277.1| 255|Drosophila melanogaster poly A
polymerase protein.
Length = 255
Score = 361 bits (888), Expect = 1e-99
Identities = 164/230 (71%), Positives = 200/230 (86%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
K LGMTSAIS A P+P D+++T++L+ SL P+ VFES+ E++HRME+L L+ LV+QW++
Sbjct: 26 KQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFESQDELNHRMEILAKLNTLVKQWVK 85
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLL 150
+ S+ KNMP S A+ +GG IYTFGSYRLGVHH+GADIDALCVAPR+IER DYF +F+++L
Sbjct: 86 EISVSKNMPESAAEKLGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERTDYFQSFFEVL 145
Query: 151 KQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKC 210
K+QP+V + R+VE+AFVPVIKMNFDGIEIDLLFARL+LKEIPD FDLRDD LL+NLD +
Sbjct: 146 KKQPEVTECRSVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRNLDHRS 205
Query: 211 VRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGV 260
VRSLNGCRVTDEIL LVPNI NFRL LR IKLWAK+HGIYSN+LGY GGV
Sbjct: 206 VRSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGV 255
>AY553964-1|AAS90558.1| 766|Drosophila melanogaster pyramus
protein.
Length = 766
Score = 34.7 bits (76), Expect = 0.37
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 521 IEARHVRRKQLHQYLSASLLCRRERTASGNKRKPDGALTHPPKKSKRLSESSNGSANGTA 580
+E R RR + Q+ L RE+ +G+K + + H PK + S SS+ S+ T+
Sbjct: 343 MERRRRRRLERQQHKLQRELWEREQREAGDKERERERVEHLPKATSSASSSSSSSSTATS 402
Query: 581 ETPKADAST 589
A A++
Sbjct: 403 TALTATAAS 411
>AE013599-1341|AAF58624.2| 702|Drosophila melanogaster CG13194-PA
protein.
Length = 702
Score = 34.7 bits (76), Expect = 0.37
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 521 IEARHVRRKQLHQYLSASLLCRRERTASGNKRKPDGALTHPPKKSKRLSESSNGSANGTA 580
+E R RR + Q+ L RE+ +G+K + + H PK + S SS+ S+ T+
Sbjct: 279 MERRRRRRLERQQHKLQRELWEREQREAGDKERERERVEHLPKATSSASSSSSSSSTATS 338
Query: 581 ETPKADAST 589
A A++
Sbjct: 339 TALTATAAS 347
>AE014298-1474|AAF46609.1| 624|Drosophila melanogaster CG15295-PA
protein.
Length = 624
Score = 33.9 bits (74), Expect = 0.64
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 546 TASGNKRKPDGALTHPPKKSKRLSESSNGSANGTAETPKADASTSSTIACT 596
+ S NK P A T K +++S S+N ++N + + S+SS+ +C+
Sbjct: 37 STSNNKHSPPAASTTTTTKRRQVSSSNNNTSNHKNNSKRCSRSSSSSSSCS 87
>AE014134-3561|AAN11140.1| 600|Drosophila melanogaster CG31601-PA
protein.
Length = 600
Score = 33.9 bits (74), Expect = 0.64
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 549 GNKRKPDGALTHPPKKSKRLSESSNGSANGTAETPKADASTSST 592
GN R+P G + P K +RLS+S+ S + ++E+ +++T ST
Sbjct: 431 GNIRRPSGIIVRPKPKRQRLSDSTFSSTD-SSESSSYESTTEST 473
>AY058370-1|AAL13599.1| 370|Drosophila melanogaster GH13855p
protein.
Length = 370
Score = 32.7 bits (71), Expect = 1.5
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 508 QAENTNMLREGLTIEARHVRRKQLHQYLSA-SLLCRRERTASGNKRKPDGALTHPPKKSK 566
++ T R+ LT H R + ++ S+ S RR ++ D A H KKS
Sbjct: 216 RSRGTEKHRDELTRSRGHSSRSRHSEHPSSGSRESRRPSKTRSSRSIHDSATIH--KKST 273
Query: 567 RLSESSNGSANGTAETPKADASTSSTIA 594
+ +S+ ++ TA P A AS S+T A
Sbjct: 274 TSTTASSKASKTTAHKPSASASASTTTA 301
>AE014134-1571|AAF52717.1| 1857|Drosophila melanogaster CG9487-PA
protein.
Length = 1857
Score = 32.7 bits (71), Expect = 1.5
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 508 QAENTNMLREGLTIEARHVRRKQLHQYLSA-SLLCRRERTASGNKRKPDGALTHPPKKSK 566
++ T R+ LT H R + ++ S+ S RR ++ D A H KKS
Sbjct: 1557 RSRGTEKHRDELTRSRGHSSRSRHSEHPSSGSRESRRPSKTRSSRSIHDSATIH--KKST 1614
Query: 567 RLSESSNGSANGTAETPKADASTSSTIA 594
+ +S+ ++ TA P A AS S+T A
Sbjct: 1615 TSTTASSKASKTTAHKPSASASASTTTA 1642
>AE014298-834|AAF46115.2| 2016|Drosophila melanogaster CG5937-PA
protein.
Length = 2016
Score = 31.9 bits (69), Expect = 2.6
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 534 YLSASLLCRRERTASGNKRKPDGALTHPPKKSKRLSESSNGSANGTAETPKADASTSST 592
YLS S L E + ++KP L HP K +S + NG A T +T S SST
Sbjct: 1841 YLSNSALHEIESGSGKLRQKPPQLLHHPQTKPMCISLNGNGDAEMT-DTGSGSGSGSST 1898
>AF165153-1|AAD51291.1| 669|Drosophila melanogaster DGP-1 protein
protein.
Length = 669
Score = 31.5 bits (68), Expect = 3.4
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 513 NMLREGL-TIEARHVRRKQLHQ--YLSAS--LLCRRERT-ASGNKRKP---DGALTHPPK 563
+M R+ L T + HV+ + + Q Y+ A L+ R RT A GN R+P A + PK
Sbjct: 507 HMSRDCLRTGDKAHVKFRFIKQPEYIRAGQRLVFREGRTKAVGNIRRPLPNAAASPYRPK 566
Query: 564 KSKRLSESSNGSANGTAETPKADASTSST 592
+K S S NG +NG+ + SS+
Sbjct: 567 PAKMQSRSHNGGSNGSNNQHRQQGQGSSS 595
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.320 0.134 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,837,998
Number of Sequences: 52641
Number of extensions: 1373426
Number of successful extensions: 4341
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4310
Number of HSP's gapped (non-prelim): 20
length of query: 596
length of database: 24,830,863
effective HSP length: 89
effective length of query: 507
effective length of database: 20,145,814
effective search space: 10213927698
effective search space used: 10213927698
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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