Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000084-TA|BGIBMGA000084-PA|IPR007012|Poly(A) polymerase,
central region, IPR002934|DNA polymerase, beta-like region,
IPR007010|Poly(A) polymerase, RNA-binding region, IPR011068|Poly(A)
polymerase, C-terminal-like
(596 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical ... 467 e-132
Z50070-12|CAA90398.2| 554|Caenorhabditis elegans Hypothetical p... 453 e-127
AL032651-3|CAB60582.1| 554|Caenorhabditis elegans Hypothetical ... 453 e-127
Z47356-6|CAA87419.1| 554|Caenorhabditis elegans Hypothetical pr... 439 e-123
AF000263-15|AAG00018.1| 416|Caenorhabditis elegans Hypothetical... 33 0.57
U56963-10|AAM97949.1| 353|Caenorhabditis elegans Temporarily as... 31 3.1
U56963-9|AAB38126.2| 404|Caenorhabditis elegans Temporarily ass... 31 3.1
U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical pr... 31 3.1
AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical... 30 5.3
U39470-3|AAC71120.1| 377|Caenorhabditis elegans Hypothetical pr... 29 9.3
>AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical
protein Y32F6A.3 protein.
Length = 655
Score = 467 bits (1152), Expect = e-132
Identities = 242/520 (46%), Positives = 330/520 (63%), Gaps = 33/520 (6%)
Query: 33 LGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIRDE 92
LG++ IS A P DI +T L +L FG +E + E RMEVL L+RLV++W+++
Sbjct: 12 LGVSQPISLAHPDSKDIAQTTLLIETLKKFGSYEPKEETEQRMEVLRNLNRLVKEWVKNV 71
Query: 93 SLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLLKQ 152
+ K +P GG ++TFGSYRLGVH GADID L V PRHI+R D+F +F ++L
Sbjct: 72 TAMK-IPNGEGVNAGGKLFTFGSYRLGVHSSGADIDTLAVVPRHIDRSDFFTSFKEMLNN 130
Query: 153 QPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKCVR 212
P V +L VE+AFVPV+K+ + G+E+D+LFARLALKE+PD+ +L DD LL+NLDQ+ VR
Sbjct: 131 DPNVTELHGVEEAFVPVMKLKYSGVELDILFARLALKEVPDTQELSDDNLLRNLDQESVR 190
Query: 213 SLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTCQL 272
SLNGCRV +++L+LVP F +TLRAIKLWAK HGIYSN++G+ GG++WA+LVAR CQL
Sbjct: 191 SLNGCRVAEQLLKLVPRQKEFCVTLRAIKLWAKNHGIYSNSMGFFGGITWAILVARACQL 250
Query: 273 YPNALPATLVHKFFLVFSQWKWPQPVLLKQPDHVNLGFP-----VWDPRVNVADRYHLMP 327
YPNA P+ LVH+ F +FS W WP PV+L + ++ P VWDPR DR+H+MP
Sbjct: 251 YPNASPSRLVHRMFFIFSTWTWPHPVVLNEMNNDRNDIPTLCELVWDPRRKNTDRFHVMP 310
Query: 328 IITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHF 387
IITPA+P+QNST NV+ ST T+I E L + +I GK W LFE NFFSRYKHF
Sbjct: 311 IITPAFPEQNSTHNVTRSTATVIKNEICEALEICRDISEGKSKWTALFEEVNFFSRYKHF 370
Query: 388 IVLLASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECYNSVPLNTNNGQPL 447
I L+ ++ + +++L + G +ES+IR L+ +LERNQ I IAH +P +
Sbjct: 371 IALIMAAPNEEEELNYGGFLESRIRLLVQSLERNQDIIIAHNDPNKHK------------ 418
Query: 448 ALPPGSTIPRETSPELNKNDKGEVVVNHCSMWFIGLVFEKTNVNVDLTYDISSFTKAVLY 507
P + +PE NK ++WFIGL F + +DLT +I F V
Sbjct: 419 ---PSPNAKFDVNPE-NK---------RVTVWFIGLEFAEHAKTLDLTNEIQRFKTNVEL 465
Query: 508 QAENTNMLREG--LTIEARHVRRKQLHQYLSASLLCRRER 545
QA N + + I+ +V+R L Q +SA+ L R R
Sbjct: 466 QASNVKGIGPNCQVQIDMFYVKRNSLIQVISAADLRRGRR 505
>Z50070-12|CAA90398.2| 554|Caenorhabditis elegans Hypothetical
protein F43G6.5 protein.
Length = 554
Score = 453 bits (1116), Expect = e-127
Identities = 215/411 (52%), Positives = 280/411 (68%), Gaps = 6/411 (1%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
+T G++ ISTA P D+E T+ L+ +L + +E + E R++VL L+ V+QWI+
Sbjct: 17 RTFGVSQPISTALPNAKDLELTSSLQKTLNQYNSYEPQEETSQRVKVLQKLNGCVKQWIQ 76
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLL 150
+ P GG + FGSYRLGVH GADID L +APRH R D+F +F +L
Sbjct: 77 -KITEARYPKDQLFNAGGQLMAFGSYRLGVHSSGADIDTLVLAPRHATRADFFSSFKQML 135
Query: 151 KQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKC 210
+ P+V +L AVE+AFVP++ M + GIEID LFARLALKE+P+ D+ DD LLKNLDQ+
Sbjct: 136 AKDPEVTNLCAVENAFVPIMTMKYSGIEIDFLFARLALKEVPEDLDILDDALLKNLDQES 195
Query: 211 VRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTC 270
VRSLNGCRV + +L+LVPN NF +TLRAIKLWAK HGIYSN++G+ GG++WA+LVAR C
Sbjct: 196 VRSLNGCRVAENLLKLVPNQENFCITLRAIKLWAKNHGIYSNSMGFFGGITWAILVARAC 255
Query: 271 QLYPNALPATLVHKFFLVFSQWKWPQPVLL-----KQPDHVNLGFPVWDPRVNVADRYHL 325
QLYPNA P+ L+ K F +FS WKWP PVLL + D L VWDPR N +DRYHL
Sbjct: 256 QLYPNASPSKLIQKVFFIFSTWKWPAPVLLDFISSDRMDLAQLNQLVWDPRRNQSDRYHL 315
Query: 326 MPIITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYK 385
MPI+TPA+PQQNST NVS S+ +I EE + L D I G C W L E NFFSRYK
Sbjct: 316 MPIVTPAFPQQNSTHNVSRSSMKVIQEEMKDALITCDNIQNGSCNWMDLLEEINFFSRYK 375
Query: 386 HFIVLLASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECYNS 436
HFI L ++ + D+L + G ES+IR L+ LE+NQ I +AH+NP+ + +
Sbjct: 376 HFISLSMTAETEKDELAFGGFFESRIRQLVLILEKNQGIKLAHINPKKFKA 426
Score = 48.4 bits (110), Expect = 1e-05
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 477 SMWFIGLVFEKTNVNVDLTYDISSFTKAVLYQAENTNMLREGLTIEA--RHVRRKQLHQY 534
S+WFIGL F++ N+DLT DI F + + YQA++ + +E +V+R L Q
Sbjct: 433 SVWFIGLQFDENVKNLDLTKDIQQFKRNIDYQAKSVKDIEANCAVETDFSYVKRSDLAQT 492
Query: 535 LSASLLCRRERTASGNKRKPDGALTHPPKKSKRLSESSNGSANGTAETPKADASTSSTI 593
+S ++ +KP+ P K +++SE +A + K D S S++
Sbjct: 493 ISV-----KDLKQGKMYKKPES--KDPVSKKRKVSE----NAPSVPKKQKLDVSEKSSV 540
>AL032651-3|CAB60582.1| 554|Caenorhabditis elegans Hypothetical
protein F43G6.5 protein.
Length = 554
Score = 453 bits (1116), Expect = e-127
Identities = 215/411 (52%), Positives = 280/411 (68%), Gaps = 6/411 (1%)
Query: 31 KTLGMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIR 90
+T G++ ISTA P D+E T+ L+ +L + +E + E R++VL L+ V+QWI+
Sbjct: 17 RTFGVSQPISTALPNAKDLELTSSLQKTLNQYNSYEPQEETSQRVKVLQKLNGCVKQWIQ 76
Query: 91 DESLRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLL 150
+ P GG + FGSYRLGVH GADID L +APRH R D+F +F +L
Sbjct: 77 -KITEARYPKDQLFNAGGQLMAFGSYRLGVHSSGADIDTLVLAPRHATRADFFSSFKQML 135
Query: 151 KQQPQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKC 210
+ P+V +L AVE+AFVP++ M + GIEID LFARLALKE+P+ D+ DD LLKNLDQ+
Sbjct: 136 AKDPEVTNLCAVENAFVPIMTMKYSGIEIDFLFARLALKEVPEDLDILDDALLKNLDQES 195
Query: 211 VRSLNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTC 270
VRSLNGCRV + +L+LVPN NF +TLRAIKLWAK HGIYSN++G+ GG++WA+LVAR C
Sbjct: 196 VRSLNGCRVAENLLKLVPNQENFCITLRAIKLWAKNHGIYSNSMGFFGGITWAILVARAC 255
Query: 271 QLYPNALPATLVHKFFLVFSQWKWPQPVLL-----KQPDHVNLGFPVWDPRVNVADRYHL 325
QLYPNA P+ L+ K F +FS WKWP PVLL + D L VWDPR N +DRYHL
Sbjct: 256 QLYPNASPSKLIQKVFFIFSTWKWPAPVLLDFISSDRMDLAQLNQLVWDPRRNQSDRYHL 315
Query: 326 MPIITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYK 385
MPI+TPA+PQQNST NVS S+ +I EE + L D I G C W L E NFFSRYK
Sbjct: 316 MPIVTPAFPQQNSTHNVSRSSMKVIQEEMKDALITCDNIQNGSCNWMDLLEEINFFSRYK 375
Query: 386 HFIVLLASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECYNS 436
HFI L ++ + D+L + G ES+IR L+ LE+NQ I +AH+NP+ + +
Sbjct: 376 HFISLSMTAETEKDELAFGGFFESRIRQLVLILEKNQGIKLAHINPKKFKA 426
Score = 48.4 bits (110), Expect = 1e-05
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 477 SMWFIGLVFEKTNVNVDLTYDISSFTKAVLYQAENTNMLREGLTIEA--RHVRRKQLHQY 534
S+WFIGL F++ N+DLT DI F + + YQA++ + +E +V+R L Q
Sbjct: 433 SVWFIGLQFDENVKNLDLTKDIQQFKRNIDYQAKSVKDIEANCAVETDFSYVKRSDLAQT 492
Query: 535 LSASLLCRRERTASGNKRKPDGALTHPPKKSKRLSESSNGSANGTAETPKADASTSSTI 593
+S ++ +KP+ P K +++SE +A + K D S S++
Sbjct: 493 ISV-----KDLKQGKMYKKPES--KDPVSKKRKVSE----NAPSVPKKQKLDVSEKSSV 540
>Z47356-6|CAA87419.1| 554|Caenorhabditis elegans Hypothetical
protein T15H9.6 protein.
Length = 554
Score = 439 bits (1081), Expect = e-123
Identities = 209/409 (51%), Positives = 280/409 (68%), Gaps = 6/409 (1%)
Query: 34 GMTSAISTAGPKPIDIEKTNDLKVSLTPFGVFESEAEMHHRMEVLGALHRLVRQWIRDES 93
G++ ISTA PK D+ T+ L+ SL F FES+ E R++VL L LV+ W++ +
Sbjct: 15 GVSQPISTAFPKANDVALTSSLQSSLEEFKSFESKQETLLRIKVLKNLDGLVKDWVQKTT 74
Query: 94 LRKNMPPSVADTVGGNIYTFGSYRLGVHHRGADIDALCVAPRHIERCDYFLTFYDLLKQQ 153
+ + +P GG + FGSYRLGVH GADID++ VAPRHI R D+F +F D+L +
Sbjct: 75 ISR-IPKDQMFNAGGKLIPFGSYRLGVHSSGADIDSIVVAPRHITRSDFFNSFKDILAKN 133
Query: 154 PQVKDLRAVEDAFVPVIKMNFDGIEIDLLFARLALKEIPDSFDLRDDMLLKNLDQKCVRS 213
P+V +L AVE AFVP++ + + G++ID+LFARLALK +P+ ++ DD LLKNLD++ VRS
Sbjct: 134 PEVTELCAVEKAFVPIMTLKYSGVDIDILFARLALKSVPEDLNILDDSLLKNLDEESVRS 193
Query: 214 LNGCRVTDEILRLVPNINNFRLTLRAIKLWAKRHGIYSNTLGYLGGVSWAMLVARTCQLY 273
LNGCRV +++L+LVP+ NF +TLRAIKLWAK HGIYSN++G+ GG++WA+LVAR CQLY
Sbjct: 194 LNGCRVAEQLLKLVPHQKNFCITLRAIKLWAKNHGIYSNSMGFFGGITWAILVARICQLY 253
Query: 274 PNALPATLVHKFFLVFSQWKWPQPVLL-----KQPDHVNLGFPVWDPRVNVADRYHLMPI 328
PNA P+ L+ K F +FS W WP PVLL + D L VWDPR N ADRYHLMPI
Sbjct: 254 PNAAPSRLIQKVFFIFSTWNWPAPVLLDYINCDRTDLAQLNQLVWDPRRNHADRYHLMPI 313
Query: 329 ITPAYPQQNSTFNVSASTRTIIMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFI 388
ITPA+PQQNST NVS S+ +I +E + L + D+I G W L E NFFS+Y HFI
Sbjct: 314 ITPAFPQQNSTHNVSRSSMKVIQDEMKKALIICDKIHEGTLEWRDLLEEINFFSKYHHFI 373
Query: 389 VLLASSASADDQLQWCGLIESKIRHLIATLERNQHITIAHVNPECYNSV 437
L + S ++L + G ES+IR L+ LE+NQ I +A +NP + V
Sbjct: 374 ALKLKAESVKEELAFGGFFESRIRQLVQILEKNQVIQVAQINPRKFKDV 422
Score = 37.5 bits (83), Expect = 0.027
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 477 SMWFIGLVFEKTNVNVDLTYDISSFTKAVLYQAENTNMLREGLTIEA--RHVRRKQLHQY 534
S+WFIGL F NVDLT DI F + Q+ + + G +E + +R L
Sbjct: 428 SIWFIGLEFVANVKNVDLTSDIQQFKMNIDRQSMSVKEIAAGCQVETDFTYEKRSNLINI 487
Query: 535 LS-ASLLCRR 543
+S L C+R
Sbjct: 488 ISKKDLSCQR 497
>AF000263-15|AAG00018.1| 416|Caenorhabditis elegans Hypothetical
protein T08B2.11 protein.
Length = 416
Score = 33.1 bits (72), Expect = 0.57
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 542 RRERTASGNKRKPDGALTHPPKKSKRLSESSNGSANGTAETPKADASTSST 592
RR+ + K TH KKS LS S G +G E PKA+ SST
Sbjct: 84 RRKEKSIEKKEHEQPKTTHRKKKSS-LSASLEGKTSGENEAPKAEQKKSST 133
>U56963-10|AAM97949.1| 353|Caenorhabditis elegans Temporarily
assigned gene nameprotein 32, isoform b protein.
Length = 353
Score = 30.7 bits (66), Expect = 3.1
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 188 LKEIPDSFDLRDDMLLKNLDQK 209
LK + D+FDLR M++KNLD K
Sbjct: 283 LKIVNDNFDLRPGMIIKNLDLK 304
>U56963-9|AAB38126.2| 404|Caenorhabditis elegans Temporarily
assigned gene nameprotein 32, isoform a protein.
Length = 404
Score = 30.7 bits (66), Expect = 3.1
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 188 LKEIPDSFDLRDDMLLKNLDQK 209
LK + D+FDLR M++KNLD K
Sbjct: 334 LKIVNDNFDLRPGMIIKNLDLK 355
>U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical
protein ZC513.3 protein.
Length = 619
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 350 IMEEFRLGLAVTDEIMLGKCGWERLFEAPNFFSRYKHFIVLLASSASADDQLQ 402
++++FR+ +A DE++ C + L SRY HF + + ++ +QLQ
Sbjct: 321 VIKKFRINMAKEDEVLQKHCKLKTLIRVRT--SRYAHFPAISVVNYNSGNQLQ 371
>AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical
protein Y73F8A.20 protein.
Length = 541
Score = 29.9 bits (64), Expect = 5.3
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 551 KRKPDGALTHPPKKSKRLSESSNGSANGTAETPKADASTSST 592
KR + + K KR S SS+ S+NGT ET +S++ST
Sbjct: 470 KRAKKALIKNSNLKKKRKSNSSS-SSNGTTETSSTKSSSTST 510
>U39470-3|AAC71120.1| 377|Caenorhabditis elegans Hypothetical
protein T08H4.3 protein.
Length = 377
Score = 29.1 bits (62), Expect = 9.3
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 556 GALTHPPKKSKR--LSESSNGSANGTAETPKADASTSST 592
G T +S+R +ESSN S NG A T ++ S+SST
Sbjct: 103 GNSTSSKDQSRRQFYTESSNSSGNGAAATSGSNGSSSST 141
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.134 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,467,171
Number of Sequences: 27539
Number of extensions: 681556
Number of successful extensions: 1779
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1759
Number of HSP's gapped (non-prelim): 14
length of query: 596
length of database: 12,573,161
effective HSP length: 85
effective length of query: 511
effective length of database: 10,232,346
effective search space: 5228728806
effective search space used: 5228728806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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