GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000084-TA|BGIBMGA000084-PA|IPR007012|Poly(A) polymerase,
central region, IPR002934|DNA polymerase, beta-like region,
IPR007010|Poly(A) polymerase, RNA-binding region, IPR011068|Poly(A)
polymerase, C-terminal-like
         (596 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    26   0.76 
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              26   1.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   4.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.4  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 26.2 bits (55), Expect = 0.76
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 450 PPGSTIPRETSPELNKNDKGEVVVNHCSMWFIGLVF 485
           P    IP +TS  ++ +  G  +VN+  M F+  VF
Sbjct: 547 PVAINIPGDTSIIVDSSTSGATIVNYSIMIFLSAVF 582


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 462 ELNKNDKGEVVVNHCSMWFIGLVFEKTNVNVDLTYDISSFTKAVLYQAENTNMLRE 517
           ++N +D+  ++   C+M    +V E  N N  ++ DI    +AVL   E   +L E
Sbjct: 51  KINMDDENVLLFIECTMKKFNVVDENANFNEKISSDI---VRAVLNDNEADQLLAE 103


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 3    KMWPASQYSHTNTQPIKATNEYQNQQNLKTLGMTSAISTAGPKPIDIE 50
            K  P+S  S    Q          QQ+++T GM   I+  G KPI ++
Sbjct: 1050 KQSPSSNQSQQIQQQQLKRVVTNQQQSIQTSGMQRIIAQIGGKPIAVQ 1097


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 9/105 (8%)

Query: 15  TQPIKATNEYQNQQNLKTLGMTSAISTAGPKPIDI------EKTNDLKVSL-TPFGVFES 67
           TQPIK      N++   T+ +  AIS A   PI +      ++T D  +   T F ++ S
Sbjct: 289 TQPIKYAKHKNNRRVWLTILLVWAISAAIGSPIVLGLNNTPDRTPDQCLFYNTDFIIYSS 348

Query: 68  EAEMHHRMEVLGALHRLVRQWIRDES--LRKNMPPSVADTVGGNI 110
            +  +    ++  L+  + + +R+ +   R N  P++ D   G+I
Sbjct: 349 LSSFYIPCIIMVFLYYNIFKALRNRARKARANRKPNLGDIKPGSI 393


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 483 LVFEKTNVNVDLTYDISSFTKAVLYQAENTNMLREGLTI 521
           ++F+  +V   LT+D  +FT+A L        L  G ++
Sbjct: 169 ILFDTVHVTFKLTFDNRAFTQASLAMTREEKHLPIGASV 207


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 549 GNKRKPDGALTHPPKKSKRLSESSNGSANGTAETPKADASTSSTIA 594
           GN  +      HPP  S  L  +   +   T  T    A+T++T A
Sbjct: 84  GNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTA 129


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,219
Number of Sequences: 429
Number of extensions: 8953
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 596
length of database: 140,377
effective HSP length: 62
effective length of query: 534
effective length of database: 113,779
effective search space: 60757986
effective search space used: 60757986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)