Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000083-TA|BGIBMGA000083-PA|undefined
         (1082 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           28   0.30 
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    25   3.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   6.4  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   8.5  

>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 9/120 (7%)

Query: 325 KIENRPTEITVRAKIENILRDIENTSDKSKSNIIETNSNDYKFASPIVVPDNTYADFKEQ 384
           K+E     +     +E++L   E+T   S S+I   ++ D    +P   P  TY     Q
Sbjct: 100 KVETLRMAVEYIRSLEDLLALDESTVSSSTSSIPSPSTTDDLSTNPTPPPHYTY-----Q 154

Query: 385 IVNNLVSTMVPYIADGYQIVDVKSGYNNTSDIDISHDTDENVVDVTPRPIGQNYLAPITV 444
           I+      +  +I     ++D    +    D+ + H +D     ++P    +  L+P TV
Sbjct: 155 IIPYEALNVDDHILSDPSLMDADLEFKGAQDLSLLHVSD----SLSPGIYSEQSLSPDTV 210


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 282 QDLISNEDLLKINHAAEKHVNDLSEDIIKPKPRFHAQTKSRNLKI 326
           Q ++S   L   N+ ++KH   +   + K +PRFH    +  LK+
Sbjct: 69  QKVVSFHKLKLTNNISDKHGFTILNSMHKYQPRFHLVRANDILKL 113


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 828 HIPQPYPVDRIVEKKVPYPVPVDRIVEKKIPVKVPYAVEKYVEKIVE 874
           HI   +    I+  + P P P+D +    +PV+ P   E+  EK  E
Sbjct: 335 HISTGFSPYEILYGRTP-PNPLDAVTSGLLPVRPPLTREEIHEKARE 380


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
            transcription factor protein.
          Length = 193

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 998  TDKQSGLKNAQNVANYIKYLQHTQSKSLNHNGLNRNR-SDFVGYQLRGAVLRA 1049
            +DK S ++  +  A YI +L H  S   N N L+ +   +   Y +R  +L+A
Sbjct: 128  SDKLSKIQTLKLAARYIDFLYHVLS---NENALDVDLIGNVCSYVVRDKLLKA 177


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,234
Number of Sequences: 317
Number of extensions: 11121
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 4
length of query: 1082
length of database: 114,650
effective HSP length: 64
effective length of query: 1018
effective length of database: 94,362
effective search space: 96060516
effective search space used: 96060516
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 48 (23.4 bits)