Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000082-TA|BGIBMGA000082-PA|IPR004000|Actin/actin-like
         (388 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    24   2.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   6.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   8.6  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 290 DIDMRNELYKHIVLSGGSTMYP 311
           D DM  +    IVL GGST  P
Sbjct: 150 DADMTKDQIDEIVLVGGSTRIP 171


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 191 RYLIKLLLLRGYAFNHSA 208
           R+L  LLL RGY   +SA
Sbjct: 581 RWLCTLLLQRGYRVEYSA 598


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 191 RYLIKLLLLRGYAFNHSA 208
           R+L  LLL RGY   +SA
Sbjct: 841 RWLCTLLLQRGYRVEYSA 858


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 191 RYLIKLLLLRGYAFNHSA 208
           R+L  LLL RGY   +SA
Sbjct: 841 RWLCTLLLQRGYRVEYSA 858


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 191 RYLIKLLLLRGYAFNHSA 208
           R+L  LLL RGY   +SA
Sbjct: 814 RWLCTLLLQRGYRVEYSA 831


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 191 RYLIKLLLLRGYAFNHSA 208
           R+L  LLL RGY   +SA
Sbjct: 814 RWLCTLLLQRGYRVEYSA 831


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 191 RYLIKLLLLRGYAFNHSA 208
           R+L  LLL RGY   +SA
Sbjct: 841 RWLCTLLLQRGYRVEYSA 858


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 191 RYLIKLLLLRGYAFNHSA 208
           R+L  LLL RGY   +SA
Sbjct: 841 RWLCTLLLQRGYRVEYSA 858


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 255 GGERFEAPEALFQPHLI 271
           GG+ FEAP     PH +
Sbjct: 402 GGQMFEAPIPNVSPHYV 418


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.139    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,399
Number of Sequences: 317
Number of extensions: 3644
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 388
length of database: 114,650
effective HSP length: 58
effective length of query: 330
effective length of database: 96,264
effective search space: 31767120
effective search space used: 31767120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)