Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000082-TA|BGIBMGA000082-PA|IPR004000|Actin/actin-like
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 496 e-141
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 345 6e-96
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 244 2e-65
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 184 2e-47
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 94 3e-20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 81 3e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 72 2e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 69 1e-12
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 46 7e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.006
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c... 27 3.4
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 27 4.5
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 27 4.5
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 27 5.9
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 496 bits (1224), Expect = e-141
Identities = 233/379 (61%), Positives = 288/379 (75%), Gaps = 2/379 (0%)
Query: 9 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 68
IV DNGTGFVK G+A NFP F FPS+VGRPI+RAE K G++ +KD+MVGDEA +RS+L
Sbjct: 6 IVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLL 65
Query: 69 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMF 128
+V YPMENG++R++E+M +WDYTF K+ +DP+ KILLTEPPMNP NREKM E MF
Sbjct: 66 QVKYPMENGIIRDFEEMNQLWDYTFF-EKLKIDPRGRKILLTEPPMNPVANREKMCETMF 124
Query: 129 EKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIAGRD 188
E+Y F YVAIQAVL+LYAQGL THI PVYE L HL RLD+AGRD
Sbjct: 125 ERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRD 184
Query: 189 ITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYNIEQEQRLALETTVLVEPYTLPD 248
TRYLI LLL +GYAFN +ADFETVR MKEKLCY+ Y++E + +L+ ETTVL+ YTLPD
Sbjct: 185 ATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPD 244
Query: 249 GRVIKVGGERFEAPEALFQPHLINVEGQGIAELVFNTIQAADIDMRNELYKHIVLSGGST 308
GRVIKVG ER+E PE LFQPHL+ E G++E +F+TIQAAD+D+R LY+ IVLSGGS+
Sbjct: 245 GRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSS 304
Query: 309 MYPGLPSRLEREIKQLYLERVLRNECDKLSKFKIRVEDPPRRKDMVFIGGAVLAEVCKNR 368
MY GLPSRLE+EIKQL+ ERVL + +L FK+++ED PRR+ VFIGGAVLA++
Sbjct: 305 MYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQN 364
Query: 369 DNFWLSRNEYLEQ-VRTSD 386
D+ W+S+ E+ E VR D
Sbjct: 365 DHMWVSKAEWEEYGVRALD 383
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 345 bits (848), Expect = 6e-96
Identities = 169/372 (45%), Positives = 240/372 (64%), Gaps = 15/372 (4%)
Query: 9 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 68
+V DNG+G K GFAG + P +FPS+VGRP R + + KD VGDEA R +L
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHHGIMVGMGQKDSYVGDEAQSKRGIL 65
Query: 69 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMF 128
+ YP+E+G+V NW+DM +W +TF +++ V P+E LLTE P+NP NREKM +++F
Sbjct: 66 TLKYPIEHGIVNNWDDMEKIWHHTFY-NELRVAPEEHPCLLTEAPLNPKSNREKMTQIIF 124
Query: 129 EKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIAGRD 188
E + + YVAIQAVL+LYA G TH P+YE +ALPH RLD+AGRD
Sbjct: 125 ETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRD 184
Query: 189 ITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYNIEQEQRLALETTVLVEPYTLPD 248
+T YL+K+L+ RGY F+ +A+ E VR +KEKLCY+ + EQE + A +++ L + Y LPD
Sbjct: 185 LTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPD 244
Query: 249 GRVIKVGGERFEAPEALFQPHLINVEGQGIAELVFNTIQAADIDMRNELYKHIVLSGGST 308
G+VI +G ERF APEALFQP + +E GI E +N+I D+D+R +LY ++V+SGG+T
Sbjct: 245 GQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTT 304
Query: 309 MYPGLPSRLEREIKQLYLERVLRNECDKLSKFKIRVEDPPRRKDMVFIGGAVLAEVCKNR 368
MYPG+ R+++EI+ L S K+++ PP RK V+IGG++LA +
Sbjct: 305 MYPGIADRMQKEIQAL-----------APSSMKVKIVAPPERKYSVWIGGSILASL-STF 352
Query: 369 DNFWLSRNEYLE 380
W+S+ EY E
Sbjct: 353 QQMWISKQEYDE 364
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 244 bits (597), Expect = 2e-65
Identities = 129/370 (34%), Positives = 198/370 (53%), Gaps = 14/370 (3%)
Query: 9 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 68
I DNG+GF+K GFAG + P +FP+ VGR I+ E + KD+ VG EA LR +L
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGR--IKHERVMPSSIQKDMFVGSEAQNLRGLL 69
Query: 69 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMF 128
++ P+E G+++NW DM +W Y + ++N P+E +LLTEPP+ +N+EK+ E +
Sbjct: 70 KIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFY 129
Query: 129 EKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIAGRD 188
E + ++Q VL LYA TH P+Y+ F++P ++ +I GRD
Sbjct: 130 ETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRD 189
Query: 189 ITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYNIEQEQRLALETTVLVEPYTLPD 248
+T YL L G+ SA+ E VR +KEK CY+ + E E + Y LPD
Sbjct: 190 VTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPD 249
Query: 249 GRVIKVGGERFEAPEALFQPHLINVEGQGIAELVFNTIQAADIDMRNELYKHIVLSGGST 308
+ I +G E F APE LF P ++ E G+ +F +I +DID+R+ LY +IVLSGGST
Sbjct: 250 NQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGST 309
Query: 309 MYPGLPSRLEREIKQLYLERVLRNECDKLSKFKIRVEDPPRRKDMVFIGGAVLAEVCKNR 368
+ G R E++ + K ++++ P R ++GG++LA + R
Sbjct: 310 LLRGFGERFISELRAI-----------SGKKNQVKIYASPERMHNAWLGGSILASLSTFR 358
Query: 369 DNFWLSRNEY 378
++ EY
Sbjct: 359 -RLLITSEEY 367
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 184 bits (447), Expect = 2e-47
Identities = 122/392 (31%), Positives = 200/392 (51%), Gaps = 41/392 (10%)
Query: 9 IVCDNGTGFVKCGFAGSNFPAFIFPSMVG--------------RPIIRAENKIGDIDVK- 53
I+ DNGTG+ K G+AG++ P+++FP+++ +P A G + K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKR 67
Query: 54 -----DLMVGDEASKLRSM-LEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKI 107
D +G++A K S + YP+ +G + NW+ M W + + +P++
Sbjct: 68 ATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLF-KYLRCEPEDHYF 126
Query: 108 LLTEPPMNPTKNREKMIEVMFEKYEFDSAYVAIQAVLTLYAQGL--------IXXXXXXX 159
LLTEPP+NP +NRE E+MFE + Y+A+QAVL L A +
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 160 XXXXTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMMKEK 219
THI PV E + + + + +AGRD+T ++ LL R + +T +KE+
Sbjct: 187 GDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRN---EPDSSLKTAERIKEE 243
Query: 220 LCYIGYNIEQE-QRLALETTVLVEPYT---LPDGRVIKVGGERFEAPEALFQPHLINVEG 275
CY+ +I +E R E ++ + I VG ERF APE F P + + +
Sbjct: 244 CCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDF 303
Query: 276 -QGIAELVFNTIQAADIDMRNELYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVLRNEC 334
+ ELV N +Q++ ID+R LYK+IVLSGGST++ +RL+R++K++ ER+ R+E
Sbjct: 304 LTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEM 363
Query: 335 ---DKLSKFKIRVEDPPRRKDMVFIGGAVLAE 363
K + V R+++ V+ GG++LA+
Sbjct: 364 LSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQ 395
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 93.9 bits (223), Expect = 3e-20
Identities = 88/355 (24%), Positives = 144/355 (40%), Gaps = 51/355 (14%)
Query: 7 KVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLR- 65
K IV DNG +K GFAG +V P +K G+ L +G+E +
Sbjct: 6 KTIVLDNGAYHIKAGFAGG--------KVVEIPNCLTRSKDGN----RLFLGNELANCND 53
Query: 66 -SMLEVSYPMENGVVRNWEDMCHVWDYTF-GPSKMNVDPKETKILLTEPPMNPTKNREKM 123
+ L+ E G + +W VWD M + +LLT+P
Sbjct: 54 FTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNT 113
Query: 124 IEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXX--------------XXTHICPV 169
I+++FE+++FD+ A L + G THI PV
Sbjct: 114 IQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPV 173
Query: 170 YEEFALPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYNIEQ 229
+ +R+D+ G+ +T YL +++ R Y N + V +KE +CY+ N ++
Sbjct: 174 IDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKY--NMMEETYIVNEIKESVCYVSQNFKE 231
Query: 230 EQRLALE--TTVLVEPYTLPD------------------GRVIKVGGERFEAPEALFQPH 269
+ + E + L Y LPD +V+ + ERF PE LF P
Sbjct: 232 DMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPS 291
Query: 270 LINVEGQGIAELVFNTIQAADIDMRNELYKHIVLSGGSTMYPGLPSRLEREIKQL 324
I + GI E V ++ +++ L +++V GG+ +PG RL E++ L
Sbjct: 292 DIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSL 346
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 80.6 bits (190), Expect = 3e-16
Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 9/234 (3%)
Query: 9 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 68
+V DNG+ ++ G+ G P +F ++V R R ++ + D ++ ++ S
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKLSRTSTLVGNDTLI-----EVGSRS 81
Query: 69 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMF 128
P E V+ NW+ M V DYTF K+ +D E I +TEP NPT R M E++F
Sbjct: 82 IARSPFERNVISNWDLMEQVLDYTF--LKLGIDRMEHPICMTEPLANPTYVRSTMTELLF 139
Query: 129 EKYEFDSAYVAIQAVLTLY--AQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIAG 186
E Y S I + + Y + +H+ PV + +R+ G
Sbjct: 140 ELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGG 199
Query: 187 RDITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYNIEQEQRLALETTVL 240
+ YL+KL ++ +F ++ C++ + + AL+ +L
Sbjct: 200 SQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIAHALDRDIL 253
Score = 50.0 bits (114), Expect = 6e-07
Identities = 17/68 (25%), Positives = 42/68 (61%)
Query: 257 ERFEAPEALFQPHLINVEGQGIAELVFNTIQAADIDMRNELYKHIVLSGGSTMYPGLPSR 316
E+ PE +F P ++ ++ GI E++ + +Q ++ + +L +++++GG PG+ +R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 317 LEREIKQL 324
++RE+ +
Sbjct: 654 IKRELTSI 661
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 71.7 bits (168), Expect = 2e-13
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 11/167 (6%)
Query: 9 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 68
IV D G+ + + GF+G + P + PS G D + L + K +
Sbjct: 14 IVIDPGSKWTRIGFSGEDIPKCVLPSYCGE----------FSDGRRLFGEEYIYKSNPGM 63
Query: 69 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMF 128
E+ + NG V NW+ +W Y ++ +P E IL+TEP NP +NR K +E MF
Sbjct: 64 EIKNAIRNGWVENWDVTVDLWRYGL-EQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 129 EKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFAL 175
E + Y+A Q +A G + + +Y+ F L
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 45.6 bits (103), Expect = 1e-05
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 277 GIAELVFNTIQAADIDMRNELYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVLRNECDK 336
GI +L N I D+D+R L ++++ GG+++ G RL+ E+ +LY
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLY----------P 375
Query: 337 LSKFKIRVE-DPPRRKDMVFIGGAVLAEVCKNRDNFWLSRNEYLE 380
S+ KI R ++GG++L+ + W+SR EY E
Sbjct: 376 GSRLKIHASGHVVERSYASWLGGSILSSL-GTFHQLWISRQEYEE 419
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 68.5 bits (160), Expect = 1e-12
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 21/149 (14%)
Query: 242 EPYTLPDGRVIKVGGERFEAPEALFQPHL--------INVEGQ-GIAELVFNTIQAADID 292
+P+ PDG K G ERF E LF P +G G+ ELV+ +I A D +
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSE 338
Query: 293 MRNELYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVLRNECDKLSKFKIR-VEDPPRRK 351
+R+ L +IV++GG+++ PGL RL+ E+++L S+ + E
Sbjct: 339 LRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATG----------SRINVHTAETASATS 388
Query: 352 DMVFIGGAVLAEVCKNRDNFWLSRNEYLE 380
+ V+ GG++LA + N + W+S+ EY E
Sbjct: 389 NAVWFGGSILASL-DNFQHLWVSKQEYDE 416
Score = 68.1 bits (159), Expect = 2e-12
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 9 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSM- 67
+V D G+ + + G+AG P I PS G +R+ D+ ++ V DE +
Sbjct: 13 LVIDPGSCWTRFGYAGEESPMTILPSYYG---VRS-----DVTGRNKYVVDELQIHAPIP 64
Query: 68 -LEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEV 126
+EV NG++++WE + W+ K+ V+P E +++TEP NP R++++E
Sbjct: 65 GMEVKNGKSNGIIQDWESTLYTWERGL-KEKLQVNPTEYAMMITEPSWNPQSVRQQIMEA 123
Query: 127 MFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYE 171
FE+ + Y+ QAV +A + PV +
Sbjct: 124 AFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVD 168
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 46.4 bits (105), Expect = 7e-06
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 73 PMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETK----ILLTEPPMNPTKNREKMIEVMF 128
P++ G V +WE + W + + S + DP +T + L P +RE + F
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY--SLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFF 170
Query: 129 EKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIAGRD 188
E+ + +A + ++ LYA G++ T I P+ + + T++L + GR
Sbjct: 171 EECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRY 230
Query: 189 ITRYLIKLL 197
+T++L LL
Sbjct: 231 MTQHLQNLL 239
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.7 bits (81), Expect = 0.006
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 121 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 180
EK+++++F F A + +++ T + G+ T I V E +P+
Sbjct: 260 EKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRI 319
Query: 181 RLDIAGRDITRYLIKLLLLRGYAFNH-----SADFETVRMMKEKLCYIG---YNIE 228
+++ G DIT +KLL+ + + D+ +K K C + YN++
Sbjct: 320 KINYGGDDITLLFMKLLMRSHFPYQDIDLKTPYDWSLANALKIKYCGLSEATYNVQ 375
>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 192 YLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYNIEQEQRLALETTVLVEP-YTLP 247
+ I L++++ Y HS ++ R+++ C + + E+E + +VEP TLP
Sbjct: 36 FFIALIIIKRY---HSCTYQKNRLLRSIFCCMSIDDEEELETDMYDLPIVEPSITLP 89
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 89 WDYTFGPS------KMNVDPKETKILLTEPPMNPTKNREKMIEVMFEKYEFDSAYVAIQA 142
W+ T PS K +PK TK+ LT P + M + + ++++ +A
Sbjct: 342 WNLTSTPSVFHYLIKAQAEPKTTKVTLTNLPYEFVRFNNSMHSIGDNNFSYNNS----EA 397
Query: 143 VLTLYAQGL 151
VL ++AQ +
Sbjct: 398 VLQIFAQSV 406
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 307 STMYPGLPSRLEREIKQLYLERVLRNECDKLSKFKIRVED 346
+TM+P + +E+E++Q + + V E +K KI +E+
Sbjct: 26 TTMHPIYETNIEKEVQQEFSDNVSEKETIDSTKSKISLEN 65
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 318 EREIKQLY--LERVLRNECDKLSKFKIRVEDPPRRKDMVFIGGAVLAEVCKNRDNFWLSR 375
E ++K+ Y L+R++ N D++ K ++ PP D + + + WL R
Sbjct: 239 ETKLKESYPSLKRIVSNVFDRIEKEILKRVQPPTNLDAYRFDPQQICQTNATKRQGWLLR 298
Query: 376 N 376
N
Sbjct: 299 N 299
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.139 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,743,483
Number of Sequences: 5004
Number of extensions: 71427
Number of successful extensions: 191
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 21
length of query: 388
length of database: 2,362,478
effective HSP length: 74
effective length of query: 314
effective length of database: 1,992,182
effective search space: 625545148
effective search space used: 625545148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)
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