Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000082-TA|BGIBMGA000082-PA|IPR004000|Actin/actin-like
(388 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 649 0.0
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 345 4e-95
SB_56| Best HMM Match : Actin (HMM E-Value=0) 344 9e-95
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 343 1e-94
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 337 1e-92
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 272 3e-73
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 231 6e-61
SB_54| Best HMM Match : Actin (HMM E-Value=0) 196 2e-50
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 122 5e-28
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 122 7e-28
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 108 9e-24
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 73 4e-13
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 66 6e-11
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 58 9e-09
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 3e-04
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 38 0.011
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 37 0.024
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 35 0.13
SB_16057| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025) 31 2.1
SB_40263| Best HMM Match : zf-TAZ (HMM E-Value=1.1) 29 6.4
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 649 bits (1603), Expect = 0.0
Identities = 303/398 (76%), Positives = 342/398 (85%), Gaps = 17/398 (4%)
Query: 1 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 60
MD G VIVCDNGTGFVKCG+AGSNFPA IFPSMVGRPIIR+ K+GDI+VKDLMVGDE
Sbjct: 1 MDANGNSVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDE 60
Query: 61 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 120
AS+LR MLEV+YPM+NG+VRNW+DM HVWDYTFG SKMN+DP+ TK+LLTEPP+NP KNR
Sbjct: 61 ASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNR 120
Query: 121 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 180
EKMIEVMFE Y+F+ Y+AIQAVLTLYAQGL+ THICPVYE FALPHLTR
Sbjct: 121 EKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTR 180
Query: 181 RLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYNIEQEQRLALETTVL 240
RLDIAGRDIT+YLIKL+LLRGYAFNH+ADFETVRMMKEKLCY+GYNIEQEQ+LALETTVL
Sbjct: 181 RLDIAGRDITKYLIKLMLLRGYAFNHTADFETVRMMKEKLCYVGYNIEQEQKLALETTVL 240
Query: 241 VEPYTLPDGRVIKVGGERFEAPEALFQPHLINVEGQGIAELVFNTIQAADIDMRNELYKH 300
VE YTLPDGRV+K+ GERFEAPEALFQPHLINVEG G+AEL+FNTIQAADID R+E YKH
Sbjct: 241 VEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKH 300
Query: 301 IVLSGGSTMYPGLPSRLEREIKQLYLERVLRNECDKLS-----------------KFKIR 343
IVLSGGSTMYPGLPSRLEREIKQLYLERVL+ + KLS KFKIR
Sbjct: 301 IVLSGGSTMYPGLPSRLEREIKQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIR 360
Query: 344 VEDPPRRKDMVFIGGAVLAEVCKNRDNFWLSRNEYLEQ 381
+EDPPRRK MVF+GGAVLA++ K++D+FW++R EY E+
Sbjct: 361 IEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEK 398
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 345 bits (848), Expect = 4e-95
Identities = 172/380 (45%), Positives = 238/380 (62%), Gaps = 15/380 (3%)
Query: 1 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 60
M+D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 61 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 120
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 117
Query: 121 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 180
EKM ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAII 177
Query: 181 RLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYNIEQEQRLALETTVL 240
RLD+AGRD+T YL+K+L RGY+F +A+ E VR +KEKLCY+ + EQE A ++ L
Sbjct: 178 RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMETAASSSSL 237
Query: 241 VEPYTLPDGRVIKVGGERFEAPEALFQPHLINVEGQGIAELVFNTIQAADIDMRNELYKH 300
+ Y LPDG+VI +G ERF PEA+FQP + +E GI E +N+I D+D+R +LY +
Sbjct: 238 EKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYAN 297
Query: 301 IVLSGGSTMYPGLPSRLEREIKQLYLERVLRNECDKLSKFKIRVEDPPRRKDMVFIGGAV 360
VLSGGSTMYPG+ R+++EI L KI++ PP RK V+IGG++
Sbjct: 298 TVLSGGSTMYPGIADRMQKEITSL-----------APPTMKIKIIAPPERKYSVWIGGSI 346
Query: 361 LAEVCKNRDNFWLSRNEYLE 380
LA + W+S+ EY E
Sbjct: 347 LASL-STFQQMWISKQEYDE 365
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 344 bits (845), Expect = 9e-95
Identities = 172/380 (45%), Positives = 241/380 (63%), Gaps = 16/380 (4%)
Query: 1 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 60
M+D+ ++V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MEDEVAALVV-DNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 57
Query: 61 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 120
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 116
Query: 121 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 180
EKM ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 117 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIL 176
Query: 181 RLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYNIEQEQRLALETTVL 240
RLD+AGRD+T YL+K+L RGY+F +A+ E VR +KEKLCY+ + EQE + A ++ L
Sbjct: 177 RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSL 236
Query: 241 VEPYTLPDGRVIKVGGERFEAPEALFQPHLINVEGQGIAELVFNTIQAADIDMRNELYKH 300
+ Y LPDG+VI +G ERF PEA+FQP + +E GI E +N+I D+D+R +LY +
Sbjct: 237 EKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYAN 296
Query: 301 IVLSGGSTMYPGLPSRLEREIKQLYLERVLRNECDKLSKFKIRVEDPPRRKDMVFIGGAV 360
VLSGGSTMYPG+ R+++EI L KI++ PP RK V+IGG++
Sbjct: 297 TVLSGGSTMYPGIADRMQKEITSL-----------APPTMKIKIIAPPERKYSVWIGGSI 345
Query: 361 LAEVCKNRDNFWLSRNEYLE 380
LA + W+S+ EY E
Sbjct: 346 LASL-STFQQMWISKQEYDE 364
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 343 bits (844), Expect = 1e-94
Identities = 172/380 (45%), Positives = 237/380 (62%), Gaps = 15/380 (3%)
Query: 1 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 60
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 61 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 120
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 117
Query: 121 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 180
EKM ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIL 177
Query: 181 RLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYNIEQEQRLALETTVL 240
RLD+AGRD+T YL+K+L RGY+F +A+ E VR +KEKLCY+ + EQE A ++ L
Sbjct: 178 RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMTTAASSSSL 237
Query: 241 VEPYTLPDGRVIKVGGERFEAPEALFQPHLINVEGQGIAELVFNTIQAADIDMRNELYKH 300
+ Y LPDG+VI +G ERF PEA+FQP + +E GI E +N+I D+D+R +LY +
Sbjct: 238 EKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYAN 297
Query: 301 IVLSGGSTMYPGLPSRLEREIKQLYLERVLRNECDKLSKFKIRVEDPPRRKDMVFIGGAV 360
VLSGGSTMYPG+ R+++EI L KI++ PP RK V+IGG++
Sbjct: 298 TVLSGGSTMYPGIADRMQKEISAL-----------APPTMKIKIIAPPERKYSVWIGGSI 346
Query: 361 LAEVCKNRDNFWLSRNEYLE 380
LA + W+S+ EY E
Sbjct: 347 LASL-STFQQMWISKQEYDE 365
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 337 bits (828), Expect = 1e-92
Identities = 168/372 (45%), Positives = 234/372 (62%), Gaps = 15/372 (4%)
Query: 9 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 68
+V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDEA R +L
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 69 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMF 128
+ YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NREKM ++MF
Sbjct: 66 TLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 129 EKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIAGRD 188
E + + YVAIQAVL+LYA G TH P+YE +ALPH RLD+AGRD
Sbjct: 125 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 189 ITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYNIEQEQRLALETTVLVEPYTLPD 248
+T YL+K+L RGY+F +A+ E VR +KEKL Y+ + EQE A ++ L + Y LPD
Sbjct: 185 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAAASSSLEKSYELPD 244
Query: 249 GRVIKVGGERFEAPEALFQPHLINVEGQGIAELVFNTIQAADIDMRNELYKHIVLSGGST 308
G+VI +G ERF PEA+FQP + +E GI E +N+I D+D+R +LY + VLSGGST
Sbjct: 245 GQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGST 304
Query: 309 MYPGLPSRLEREIKQLYLERVLRNECDKLSKFKIRVEDPPRRKDMVFIGGAVLAEVCKNR 368
M+PG+ R+++EI L KI++ PP RK V+IGG++LA +
Sbjct: 305 MFPGIADRMQKEISAL-----------APPTMKIKIIAPPERKYSVWIGGSILASL-STF 352
Query: 369 DNFWLSRNEYLE 380
W+S+ EY E
Sbjct: 353 QQMWISKQEYDE 364
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 272 bits (667), Expect = 3e-73
Identities = 152/380 (40%), Positives = 213/380 (56%), Gaps = 42/380 (11%)
Query: 1 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 60
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 61 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 120
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 117
Query: 121 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 180
EKM ++MFE + + YVAIQAVL+LYA G +H P+YEE T
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEERGYSFTT- 176
Query: 181 RLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYNIEQEQRLALETTVL 240
A R+I R + KEKLCY+ + EQE + A ++ +
Sbjct: 177 ---TAEREIVRDI-----------------------KEKLCYVALDFEQEMQTAASSSSI 210
Query: 241 VEPYTLPDGRVIKVGGERFEAPEALFQPHLINVEGQGIAELVFNTIQAADIDMRNELYKH 300
+ Y LPDG+VI +G ERF PEAL QP + +E GI E +N+I D+D+R +LY +
Sbjct: 211 EKSYELPDGQVITIGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYAN 270
Query: 301 IVLSGGSTMYPGLPSRLEREIKQLYLERVLRNECDKLSKFKIRVEDPPRRKDMVFIGGAV 360
V+SGG+TMYPGL R+++EI L S KI++ PP RK V+IGG++
Sbjct: 271 TVMSGGTTMYPGLADRMQKEISAL-----------APSTMKIKIIAPPERKYSVWIGGSI 319
Query: 361 LAEVCKNRDNFWLSRNEYLE 380
LA + W+S+ EY E
Sbjct: 320 LASL-STFQQMWISKQEYDE 338
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 231 bits (566), Expect = 6e-61
Identities = 116/262 (44%), Positives = 162/262 (61%), Gaps = 12/262 (4%)
Query: 119 NREKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHL 178
N + M ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 179 TRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYNIEQEQRLALETT 238
RLD+AGRD+T YL+K+L RGY+F +A+ E VR +KEKLCY+ + EQE + A ++
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSS 197
Query: 239 VLVEPYTLPDGRVIKVGGERFEAPEALFQPHLINVEGQGIAELVFNTIQAADIDMRNELY 298
L + Y LPDG+VI +G ERF PEA+FQP + +E GI E +N+I D+D+R +LY
Sbjct: 198 SLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLY 257
Query: 299 KHIVLSGGSTMYPGLPSRLEREIKQLYLERVLRNECDKLSKFKIRVEDPPRRKDMVFIGG 358
+ VLSGG+TMYPG+ R+++EI L KI++ PP RK V+IGG
Sbjct: 258 ANTVLSGGTTMYPGIADRMQKEISAL-----------APPTMKIKIIAPPERKYSVWIGG 306
Query: 359 AVLAEVCKNRDNFWLSRNEYLE 380
++LA + W+S+ EY E
Sbjct: 307 SILASL-STFQQMWISKQEYDE 327
Score = 84.6 bits (200), Expect = 1e-16
Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 1 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 60
MDD +++ DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MDDDVAALVI-DNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 57
Query: 61 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNV 100
A R +L + YP+E+G+V NW+DM + TF M V
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIMFETFNSPAMYV 97
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 196 bits (479), Expect = 2e-50
Identities = 93/218 (42%), Positives = 139/218 (63%), Gaps = 2/218 (0%)
Query: 88 VWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMFEKYEFDSAYVAIQAVLTLY 147
+W++ F ++ V ++ +LLTE P+NP NRE+M+++MFE + YVA+QAV+ LY
Sbjct: 2131 MWEHAF--DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 148 AQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHS 207
A G +H PVY+ + LPH T+R+D+AGRD+T YL +L+ RGY+F +
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQST 2248
Query: 208 ADFETVRMMKEKLCYIGYNIEQEQRLALETTVLVEPYTLPDGRVIKVGGERFEAPEALFQ 267
A+ + +R +KE LCY + E+E + A + PY LPDG+ I++G ERF A E LFQ
Sbjct: 2249 AEQQIIRDLKETLCYCAMDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQ 2308
Query: 268 PHLINVEGQGIAELVFNTIQAADIDMRNELYKHIVLSG 305
P L+ + GI E +F +I+ DID+R EL+ +IVLSG
Sbjct: 2309 PSLLGRDIDGIHESIFKSIKKCDIDLRAELFHNIVLSG 2346
Score = 43.6 bits (98), Expect = 3e-04
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 2 DDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRP 39
+ G V+V DNG+GF K G + P +FP++VGRP
Sbjct: 2090 EQNGGTVVVIDNGSGFCKAGLSTDESPRVVFPAIVGRP 2127
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 122 bits (294), Expect = 5e-28
Identities = 78/206 (37%), Positives = 111/206 (53%), Gaps = 43/206 (20%)
Query: 107 ILLTEPPMNPTKNREKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHI 166
+LLTE P+NP +NREK EV FE + + ++++QAVL+LYA G +H
Sbjct: 129 VLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGVSHS 188
Query: 167 CPVYEEFALPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYN 226
P+YE FA+PH R DIAGRD++RYL LL G+ F+ S++ E VR +KE+ +
Sbjct: 189 VPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE------S 242
Query: 227 IEQEQRLALETTVLVEPYTLPDGRVIKVGGERFEAPEALFQPHLINVEGQGIAELVFNTI 286
+E E+ + Y LPDG +I+V L F I
Sbjct: 243 MESER----------QQYALPDGSIIEV--------------------------LAF-AI 265
Query: 287 QAADIDMRNELYKHIVLSGGSTMYPG 312
Q +D+D+R LY +IVLSGGST++ G
Sbjct: 266 QKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 122 bits (293), Expect = 7e-28
Identities = 60/142 (42%), Positives = 89/142 (62%), Gaps = 12/142 (8%)
Query: 239 VLVEPYTLPDGRVIKVGGERFEAPEALFQPHLINVEGQGIAELVFNTIQAADIDMRNELY 298
+L + Y LPDG+VI +G ERF PEA+FQP + +E GI E ++N I D+D+R +LY
Sbjct: 9 ILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRKDLY 68
Query: 299 KHIVLSGGSTMYPGLPSRLEREIKQLYLERVLRNECDKLSKFKIRVEDPPRRKDMVFIGG 358
+ VLSGGSTM+PG+ R+++EI +L N + K++V PP RK V+IGG
Sbjct: 69 SNCVLSGGSTMFPGIADRMQKEI------AMLAN-----ASMKVKVIAPPERKYSVWIGG 117
Query: 359 AVLAEVCKNRDNFWLSRNEYLE 380
++LA + W+++ EY E
Sbjct: 118 SILASL-STFQQMWIAKEEYHE 138
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 108 bits (259), Expect = 9e-24
Identities = 52/116 (44%), Positives = 73/116 (62%)
Query: 126 VMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIA 185
+MFE + + YVAIQAVL+LYA G +H P+YE +ALPH RLD+A
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 186 GRDITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYIGYNIEQEQRLALETTVLV 241
GRD+T YL+KL+ RGY+F +A+ E VR +KEKLCY+ + QE + + V++
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEIIIIIIIIVII 116
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 72.9 bits (171), Expect = 4e-13
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 141 QAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLLL-L 199
Q L+LYA G+ T +YE L H + L+I G +T L + L
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
Query: 200 RGYAFNHSADFETVRMMKEKLCYIGYNIEQEQRLALETTVLVEPYTLPDGRVIKVGGERF 259
RG+ F S+ ++ V +KEK+CY+ + +E L + YTLPDG++I +G E
Sbjct: 827 RGHNFTSSSGWQIVNDIKEKICYLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYECI 886
Query: 260 EAPEALFQPHLI 271
+ E LF+P L+
Sbjct: 887 SSMEPLFRPDLL 898
Score = 45.6 bits (103), Expect = 7e-05
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 1 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGD-IDVKDLMVGD 59
+D + IV DNG G K GFAG P I P++VG P R IGD ++VKD
Sbjct: 695 LDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNP-QRFSMLIGDNVNVKDYKKYG 753
Query: 60 EASKLRS 66
+A+ +S
Sbjct: 754 DAAVAKS 760
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 65.7 bits (153), Expect = 6e-11
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 252 IKVGGERFEAPEALFQPHLINVE-GQGIAELVFNTIQAADIDMRNELYKHIVLSGGSTMY 310
+ V ERF PE F P N + ++E+V N IQ ID+R LYK+IVLSGGSTM+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMF 255
Query: 311 PGLPSRLEREIK-----QLYLERVLRNECDKLSKFKIRVEDPPRRKDMVFIGGAVLA 362
RL+R+IK +L + L K + +V ++ V+ GG++LA
Sbjct: 256 RDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWFGGSMLA 312
Score = 43.2 bits (97), Expect = 4e-04
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 164 THICPVYEEFALPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMMKEKLCYI 223
TH+ PV E + + + + IAGRDIT ++ +LL R ET + +KE+ YI
Sbjct: 73 THVIPVAEGYVIGSCIKHIPIAGRDITFFVQQLLREREMGIPPEQSMETAKTIKERWGYI 132
Query: 224 GYNIEQE 230
+I +E
Sbjct: 133 CPDIAKE 139
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 58.4 bits (135), Expect = 9e-09
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 73 PMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMFEKYE 132
P+++G++ +W+ + DY + + + D +L++E N REK+ E+MFEKY
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKN-IKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYN 61
Query: 133 FDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIAGRDIT 190
+ ++ +VLT +A G T PV++ + L R +AG IT
Sbjct: 62 VPAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFIT 119
Score = 40.3 bits (90), Expect = 0.003
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 277 GIAELVFNTIQAADIDMRNELYKHIVLSGGSTMYPGLPSRLEREI 321
G+ ++V ++ DID+R L+ ++++GG+T+ G RL RE+
Sbjct: 151 GVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNREL 195
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 43.6 bits (98), Expect = 3e-04
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 274 EGQGIAELVFNTIQAADIDMRNELYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVLRNE 333
E + +A + +++ ID R L ++IVL GG+ M PG RL +EI YL
Sbjct: 54 EEKSLATALLDSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEI---YLLLQSPKY 110
Query: 334 CDKLSKFKIRVEDPPRRKDM-VFIGGAVLA--EVCKNRDNFWLSRNEYLEQVRTSDSS 388
DKL +++ PP ++ ++GGA+ EV +R +R Y + + D S
Sbjct: 111 KDKLFIKTVKMHQPPVNANITAWLGGAIFGSLEVLADRST---TRERYQQHPKLPDWS 165
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 38.3 bits (85), Expect = 0.011
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 9 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 68
+V D G K GFA + P I P+ I +A++ + + L +GD+ + +
Sbjct: 236 LVLDCGACSQKIGFASNQAPRSI-PNA----IFKAKS-----ERRKLFIGDQIEECKDYS 285
Query: 69 EVSY--PMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTE 111
+ Y P + G + NW+ +WDYTFG K ++ +IL E
Sbjct: 286 ALFYVLPFQKGFLVNWDVEKQIWDYTFG--KEGLEDAMDEILFEE 328
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 37.1 bits (82), Expect = 0.024
Identities = 12/55 (21%), Positives = 32/55 (58%)
Query: 98 MNVDPKETKILLTEPPMNPTKNREKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLI 152
+ VDP + K+++T P + +E+++E++ + + Y+ Q++L +Y+ +
Sbjct: 521 LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYSYSAV 575
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 34.7 bits (76), Expect = 0.13
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 9 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRP 39
+V D G+ K GFAG + P +FP +VGRP
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRP 1389
>SB_16057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 31.5 bits (68), Expect = 1.2
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 179 TRRLDIAGRDITRYLIKLLLLRGYAF---NHSADFETVRMMKEKLCYIGYNIEQEQRLAL 235
TR D + R+IT Y K ++ R + F +H V K L YI + Q A
Sbjct: 55 TRIADDSVREITGYFTKRMVSRDWQFPYKDHDEHGFPVESDKLPLEYISTTGKSGQNRAK 114
Query: 236 ETTVLVEPYTLP 247
T + ++P++LP
Sbjct: 115 NTLIYIKPHSLP 126
>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1800
Score = 31.1 bits (67), Expect = 1.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 51 DVKDLMVGDEASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGP 95
D+K+ M + A+K+RS+ E + P + ++ D+ VWD F P
Sbjct: 598 DLKETMAREIAAKVRSIAEATTPSGSYLLDALGDIDRVWDRFFPP 642
>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
Length = 2182
Score = 30.7 bits (66), Expect = 2.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 62 SKLRSMLEVSYPMENGVVRNWEDMCHVWD 90
SKL + + + P+ N V ++ MC+VWD
Sbjct: 1832 SKLSNQINMKIPLRNMPVNDFTPMCYVWD 1860
>SB_40263| Best HMM Match : zf-TAZ (HMM E-Value=1.1)
Length = 1033
Score = 29.1 bits (62), Expect = 6.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 308 TMYPGLPSRLEREIKQLYLERVLRNECDKLSKFKIRVEDPPRRKDM 353
T GL E E++ L E+ L + K + K+R DP + +D+
Sbjct: 434 TSIHGLDFEAEGELRSLCQEKALTSAATKTREAKVREGDPQKHEDL 479
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.139 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,664,412
Number of Sequences: 59808
Number of extensions: 503515
Number of successful extensions: 1144
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 32
length of query: 388
length of database: 16,821,457
effective HSP length: 83
effective length of query: 305
effective length of database: 11,857,393
effective search space: 3616504865
effective search space used: 3616504865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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