Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000081-TA|BGIBMGA000081-PA|IPR003958|Transcription
factor CBF/NF-Y/archaeal histone, IPR009072|Histone-fold
         (119 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    72   2e-14
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...    65   3e-12
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    55   3e-09
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    26   1.4  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    24   7.4  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    23   9.7  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    23   9.7  

>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 72.1 bits (169), Expect = 2e-14
 Identities = 35/89 (39%), Positives = 56/89 (62%)

Query: 4  KLEDLNLPLTVVTRIVKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKKRKA 63
          +L+DL LP +++ R+VK  LP    + KEA   +  +A++FV ++TSA+  I  N  RK 
Sbjct: 11 ELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRKI 70

Query: 64 LTGQDVIDAMKDIEFDRFVEPLGEALEHY 92
          L  QDV++A+ +IE+  F + L + LE Y
Sbjct: 71 LMPQDVLNALDEIEYPEFSKTLKKHLEAY 99


>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score = 64.9 bits (151), Expect = 3e-12
 Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 2  AEKLEDLNL-PLTVVTRIVKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKK 60
          A+ L+  NL P+  V RI+K ALP    ISKEA+  +    S F+ +VT  A+     +K
Sbjct: 3  ADGLDYTNLLPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEK 62

Query: 61 RKALTGQDVIDAMKDIEFDRFVEPLGEALEHY 92
          RK +TG+DV+ A+  + F+ + E L  +L  Y
Sbjct: 63 RKTITGEDVLLALNTLGFENYAEVLKISLTKY 94


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 161

 Score = 54.8 bits (126), Expect = 3e-09
 Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 6  EDLNLPLTVVTRIVKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKKRKALT 65
          ++L+LP   V ++V + LP  ++ +KEAR  L +    F+  V+S A  I + + +K + 
Sbjct: 8  DELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIA 67

Query: 66 GQDVIDAMKDIEFDRFV-EPLGEALEH 91
           + +I A++++EF  ++ E L  A EH
Sbjct: 68 AEHIIKALENLEFKEYIAEALEVAAEH 94


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 48  VTSAATNIVKNKKRKALTGQDVIDAMKDIEFDRFVEPLGEALEH 91
           V +AAT ++  K   ++T QD+  ++++  F   VE    A+ H
Sbjct: 219 VEAAATELLDPKNPSSVTKQDLCYSLQETGFAMLVEITERAMAH 262


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 11  PLTVVTRIVKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNK 59
           P T  ++++   +    +I +  R G      VF LY T  A +++K +
Sbjct: 330 PYTRTSKLINVPISKSSAIQRSGRAGRTMRGKVFRLY-TEKAYSLMKEE 377


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 47  YVTSAATNIVKNKKRKALTGQDVIDAMK 74
           +   +A N+++ K    +  Q VID++K
Sbjct: 773 FKAGSALNLIREKAHSGVVNQKVIDSIK 800


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 9   NLPLTVVTRIVKEALPSGVSISKEART 35
           N PL  V  +V + LP  + + K ART
Sbjct: 113 NQPLPHVVNLVNDILPPCIRVWKMART 139


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 354,960
Number of Sequences: 5004
Number of extensions: 10800
Number of successful extensions: 37
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 8
length of query: 119
length of database: 2,362,478
effective HSP length: 65
effective length of query: 54
effective length of database: 2,037,218
effective search space: 110009772
effective search space used: 110009772
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)