GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000081-TA|BGIBMGA000081-PA|IPR003958|Transcription
factor CBF/NF-Y/archaeal histone, IPR009072|Histone-fold
         (119 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25394| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=1.7e-11)        110   3e-25
SB_49434| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.6e-08)         31   0.19 
SB_45976| Best HMM Match : MBT (HMM E-Value=0)                         27   4.1  
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)             26   7.2  
SB_24644| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  

>SB_25394| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=1.7e-11)
          Length = 149

 Score =  110 bits (265), Expect = 3e-25
 Identities = 55/92 (59%), Positives = 67/92 (72%)

Query: 1  MAEKLEDLNLPLTVVTRIVKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKK 60
          MAEK EDLNLP  VV R+VKEALP GVSISKEAR+ + KAASVFVLY TS A N   + K
Sbjct: 1  MAEKPEDLNLPNAVVVRLVKEALPDGVSISKEARSAIGKAASVFVLYATSCANNFALSHK 60

Query: 61 RKALTGQDVIDAMKDIEFDRFVEPLGEALEHY 92
          RK L   DVI A++D+EF++F+  L + L  +
Sbjct: 61 RKTLQATDVISALEDMEFEQFIPQLKQDLNAF 92


>SB_49434| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.6e-08)
          Length = 120

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 10 LPLTVVTRIVKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKKRKALTGQDV 69
          LPL+ +  I+K + P   +IS+E+   +A++  VFV Y+  AA  + K + +K L+ + +
Sbjct: 16 LPLSKIKTILKSS-PDLANISQESLFLIARSTEVFVNYLAVAA--LKKEESKKHLSYKAL 72

Query: 70 IDAMKDIEFDRFVEPL 85
             ++D +  +F+  +
Sbjct: 73 AQLVEDEDALQFLSDI 88


>SB_45976| Best HMM Match : MBT (HMM E-Value=0)
          Length = 839

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 35  TGLAKAASVFVLYVTSAATNIVKNKKRKALTGQD 68
           TG       FV ++ +    I+K KK+K++ GQ+
Sbjct: 258 TGRKNKGREFVRFIKTVDGKIIKKKKKKSVKGQE 291


>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
          Length = 383

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 12  LTVVTRIVKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKKRKALTGQDVID 71
           ++ VT++ ++   S +S+S+ A   L K   +      +AA+ +   K  +   G  VID
Sbjct: 135 ISAVTQLPQDKPSSEMSMSEVASHLLLKCLGLIFSMPIAAASLVETVKTERIKDGYGVID 194

Query: 72  AMKD 75
             KD
Sbjct: 195 TFKD 198


>SB_24644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 47 YVTSAATNIVKNKKRKALTGQDVI-DAMK-DIEFDR 80
          Y    AT I+KN+    LT  D+I  AMK DIE+ R
Sbjct: 31 YQDPKATEIIKNECPVVLTDSDIISSAMKWDIEYLR 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.131    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,772
Number of Sequences: 59808
Number of extensions: 66535
Number of successful extensions: 260
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 5
length of query: 119
length of database: 16,821,457
effective HSP length: 73
effective length of query: 46
effective length of database: 12,455,473
effective search space: 572951758
effective search space used: 572951758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)