GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000081-TA|BGIBMGA000081-PA|IPR003958|Transcription
factor CBF/NF-Y/archaeal histone, IPR009072|Histone-fold
         (119 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.        24   1.6  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    21   8.8  

>Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.
          Length = 91

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 32 EARTGLAKAASVFVLYVTSAATNIVKNKKRKALTGQDVIDAM 73
          E R G+ K   VF+  V   A    ++ KRK +T  DV+ A+
Sbjct: 53 EERRGVLK---VFLENVIRDAVAYTEHAKRKTVTAMDVVYAL 91


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 18  IVKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNI 55
           +V  +L   +SI +  R G   +  +F+LY+    T +
Sbjct: 632 LVNGSLSPPISIRRSVRQGDPLSMHLFILYLHPLITRL 669


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.131    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,890
Number of Sequences: 2123
Number of extensions: 1887
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 119
length of database: 516,269
effective HSP length: 57
effective length of query: 62
effective length of database: 395,258
effective search space: 24505996
effective search space used: 24505996
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)