GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000081-TA|BGIBMGA000081-PA|IPR003958|Transcription
factor CBF/NF-Y/archaeal histone, IPR009072|Histone-fold
         (119 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-7|AAC77511.1|  137|Caenorhabditis elegans Hypothetical pr...    55   1e-08
AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical ...    55   2e-08
AL132949-3|CAB61070.1|  179|Caenorhabditis elegans Hypothetical ...    36   0.008
Z81546-4|CAB04453.1|  184|Caenorhabditis elegans Hypothetical pr...    34   0.023
Z22178-2|CAA80154.1|  261|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z71180-1|CAA94891.1|  267|Caenorhabditis elegans Hypothetical pr...    27   3.5  

>U00043-7|AAC77511.1|  137|Caenorhabditis elegans Hypothetical
          protein T26A5.8 protein.
          Length = 137

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 22/75 (29%), Positives = 50/75 (66%), Gaps = 3/75 (4%)

Query: 3  EKLEDLNLPLTVVTRIVKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKKRK 62
          +++  + +P  +VTR++KE     +S SK+AR  +A+AA+VF++ ++  +    +++K K
Sbjct: 11 DRIAQMMMPAAIVTRLMKE---DNISASKDARDVIARAAAVFLINLSDVSAQSARDQKHK 67

Query: 63 ALTGQDVIDAMKDIE 77
           ++G DV+  ++++E
Sbjct: 68 TISGDDVVKGLRELE 82


>AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical
           protein W10D9.4 protein.
          Length = 403

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 26/83 (31%), Positives = 44/83 (53%)

Query: 10  LPLTVVTRIVKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKKRKALTGQDV 69
           LP+  V RI+K  +     ++K+A+    +  S F+ ++ S A  I    KRK +T  D+
Sbjct: 66  LPIANVVRIMKTQMDPQAKLAKDAKECAQECVSEFISFIASEAAEICNITKRKTITADDL 125

Query: 70  IDAMKDIEFDRFVEPLGEALEHY 92
           + AM+   FD + EP+   L+ Y
Sbjct: 126 LTAMEATGFDNYAEPMRIFLQKY 148


>AL132949-3|CAB61070.1|  179|Caenorhabditis elegans Hypothetical
           protein Y53F4B.3 protein.
          Length = 179

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 3   EKLEDLNLPLTVVTRIVKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKKRK 62
           E+L    LPL  V ++V+   P    ++ EA   +AKAA +F+  +++AA      +KRK
Sbjct: 29  EELVRSQLPLGRVKKVVRMN-PDVEMLNNEALQLMAKAAELFIKELSNAANQNAALEKRK 87

Query: 63  ALTGQDVIDAMKDIEFDRFVE 83
            +  +D+  A+K      F+E
Sbjct: 88  TVQTKDIDKAIKKTWAFAFLE 108


>Z81546-4|CAB04453.1|  184|Caenorhabditis elegans Hypothetical
          protein F53A2.5 protein.
          Length = 184

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 7  DLNLPLTVVTRIVKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKKRKALTG 66
          ++ LP   + +I+KE +P  + I+ E+R  +      FV ++   A  I    +RK +  
Sbjct: 19 EIGLPQKGINQIIKEVVPE-MRIANESRDMINACCVEFVKHIAREAQRIASQDQRKTIYH 77

Query: 67 QDVIDAMKDIEF 78
          + V  A++++ F
Sbjct: 78 EHVQKALQNLGF 89


>Z22178-2|CAA80154.1|  261|Caenorhabditis elegans Hypothetical
           protein F54C8.2 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 3   EKLEDLNLPLTVVTRIVKEALPSGVSISKEAR------TGLAKAASVFVLYVTSAATNIV 56
           ++ EDL +P     R+V+E + +    S + R        L +A+   ++ +   ++ I 
Sbjct: 178 QESEDLLIPKAPFARLVREIMQTSTPFSSDLRIRSDAINALQEASEALLVQMFDGSSLIS 237

Query: 57  KNKKRKALTGQDV 69
            + KR  LT  DV
Sbjct: 238 AHSKRATLTTTDV 250


>Z71180-1|CAA94891.1|  267|Caenorhabditis elegans Hypothetical
          protein F22E12.3 protein.
          Length = 267

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 19 VKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKKRKALTGQDVI 70
          V+EA+   +   K++  G+ K A    L +T      +KN  +K   GQ+++
Sbjct: 14 VEEAIKKDIWSMKKSSKGMEKLAKGICLLITDNNGGELKNVYKKNSEGQNIV 65


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.131    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,867
Number of Sequences: 27539
Number of extensions: 52082
Number of successful extensions: 237
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 6
length of query: 119
length of database: 12,573,161
effective HSP length: 73
effective length of query: 46
effective length of database: 10,562,814
effective search space: 485889444
effective search space used: 485889444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)