Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000080-TA|BGIBMGA000080-PA|IPR000697|EVH1
         (338 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)               77   3e-14
SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)                    29   4.1  
SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   9.4  

>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 76.6 bits (180), Expect = 3e-14
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query: 36 VVINCGIVRGLKYNQATATFHQWRDARHVYGLNFSCREDADSFARAMMHTLEILANK 92
          VVINC + + LKYN+AT TFHQWRD R VYGLNF  +++AD F +A+   LE L  +
Sbjct: 6  VVINCALAKRLKYNEATPTFHQWRDQRQVYGLNFQSKDEADLFGQAVRDALETLKTR 62


>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
          Length = 924

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 43  VRGLKYNQATATFHQWRD--ARHVYGLNFSCREDADSF 78
           ++ ++  + +  F QWR+  +R+ +GLNF   E+AD F
Sbjct: 166 LKEIRLKKTSDFFVQWRNRKSRNAWGLNFISAEEADRF 203


>SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 717

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 188 TLPHQPSQPTPGHHRTNSAPMAPN 211
           TLP   SQP+P HH   + PM P+
Sbjct: 200 TLPFVTSQPSPVHHVIINNPMPPS 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.130    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,734,437
Number of Sequences: 59808
Number of extensions: 221008
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 3
length of query: 338
length of database: 16,821,457
effective HSP length: 83
effective length of query: 255
effective length of database: 11,857,393
effective search space: 3023635215
effective search space used: 3023635215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)