Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000080-TA|BGIBMGA000080-PA|IPR000697|EVH1
         (338 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31600.3 68414.m03879 oxidoreductase, 2OG-Fe(II) oxygenase fa...    30   2.5  
At1g31600.2 68414.m03877 oxidoreductase, 2OG-Fe(II) oxygenase fa...    30   2.5  
At1g31600.1 68414.m03878 oxidoreductase, 2OG-Fe(II) oxygenase fa...    30   2.5  

>At1g31600.3 68414.m03879 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein contains Pfam profiles PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family, PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 431

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 31  NTFRVVVINCGIVRGLKYNQATATFHQWRDARHVYGLNFSCREDADSFAR--AMMHTLEI 88
           N+  + V NCG   GL +N   A F ++ +   VY  + S      SFA   +    LE 
Sbjct: 107 NSSNLYVANCGPAVGLTHNAIAAVFAEFGEVNGVYAADDSGVRVIVSFADPFSAKAALEA 166

Query: 89  LANKP 93
           L+ +P
Sbjct: 167 LSGRP 171


>At1g31600.2 68414.m03877 oxidoreductase, 2OG-Fe(II) oxygenase
          family protein contains Pfam profiles PF03171:
          oxidoreductase, 2OG-Fe(II) oxygenase family, PF00076:
          RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 344

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 31 NTFRVVVINCGIVRGLKYNQATATFHQWRDARHVYGLNFSCREDADSFAR--AMMHTLEI 88
          N+  + V NCG   GL +N   A F ++ +   VY  + S      SFA   +    LE 
Sbjct: 22 NSSNLYVANCGPAVGLTHNAIAAVFAEFGEVNGVYAADDSGVRVIVSFADPFSAKAALEA 81

Query: 89 LANKP 93
          L+ +P
Sbjct: 82 LSGRP 86


>At1g31600.1 68414.m03878 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein contains Pfam profiles PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family, PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 431

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 31  NTFRVVVINCGIVRGLKYNQATATFHQWRDARHVYGLNFSCREDADSFAR--AMMHTLEI 88
           N+  + V NCG   GL +N   A F ++ +   VY  + S      SFA   +    LE 
Sbjct: 107 NSSNLYVANCGPAVGLTHNAIAAVFAEFGEVNGVYAADDSGVRVIVSFADPFSAKAALEA 166

Query: 89  LANKP 93
           L+ +P
Sbjct: 167 LSGRP 171


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.130    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,343,865
Number of Sequences: 28952
Number of extensions: 154168
Number of successful extensions: 409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 3
length of query: 338
length of database: 12,070,560
effective HSP length: 81
effective length of query: 257
effective length of database: 9,725,448
effective search space: 2499440136
effective search space used: 2499440136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)