GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000080-TA|BGIBMGA000080-PA|IPR000697|EVH1
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294...    29   7.1  
12_01_0909 - 8828921-8829004,8829204-8829249,8829798-8829919,883...    28   9.3  
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733     28   9.3  

>04_04_1374 -
           33028790-33028951,33029033-33029087,33029402-33029466,
           33029558-33029701,33029825-33029878,33029971-33030220,
           33030340-33030446,33031206-33031216,33032682-33032796,
           33032897-33033005,33033088-33033203,33033288-33033647
          Length = 515

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 36  VVINCGIVRGLKYNQATATFHQWRDARHVYGLNFSCREDADSFARAMMHTL 86
           + I CG V   +Y +  A  H W++ +H Y L+   +   D    + +H L
Sbjct: 262 ICIICGFVGCGRYEEGHAIRH-WKETQHCYSLDLETQRVWDYVGDSYVHRL 311


>12_01_0909 -
           8828921-8829004,8829204-8829249,8829798-8829919,
           8830013-8830078,8830520-8830771,8830859-8830939,
           8831193-8831294,8831373-8831410,8831497-8831602,
           8831694-8831816,8831918-8831994,8833095-8833240,
           8833355-8833533
          Length = 473

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 2   VYDDGQKRWVPSGSSSGLSKVHIYHHTQHNTFRVVVINCGIVRGLKYNQATATFH 56
           VY+ G   +   GS+  L K+H+  ++      V+ ++     GL Y++ T+ ++
Sbjct: 105 VYEHGPFNFESGGSAKSLPKLHLNPYSWSKVSSVIYLDSPAGVGLSYSKNTSDYN 159


>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
          Length = 760

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 10/35 (28%), Positives = 22/35 (62%)

Query: 298 VNGGEGGCVTAAEWDAFKQEMMKEMRKELNIMKRE 332
           + GGEGG  +++ W   + + + ++R EL++  +E
Sbjct: 479 LGGGEGGSASSSRWPKTEVQALIQLRMELDMRYQE 513


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.130    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,710,657
Number of Sequences: 37544
Number of extensions: 194417
Number of successful extensions: 476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 3
length of query: 338
length of database: 14,793,348
effective HSP length: 82
effective length of query: 256
effective length of database: 11,714,740
effective search space: 2998973440
effective search space used: 2998973440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)