GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000080-TA|BGIBMGA000080-PA|IPR000697|EVH1
         (338 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     71   2e-12
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    71   2e-12
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    71   2e-12

>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 1   MVYDDGQKRWVP-SGSSSGLSKVHIYHHTQHNTFRVV--------VINCGIVRGLKYNQA 51
           M Y++  K WV   G+   ++ V +    +   FR+V        ++NC I RG+KY++A
Sbjct: 15  MTYNESTKGWVLLGGNDDSMTNVRLIQDIRRPEFRIVSNRADSTNILNCNIYRGIKYHKA 74

Query: 52  TATFHQWR-DARHVYGLNFSCREDADSFARAMMHTLEIL 89
           T  FHQWR + R VYGLNF   +DA  F   ++  +E L
Sbjct: 75  TPMFHQWRTEQRRVYGLNFENEQDATMFLSIVLQAIETL 113


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
          protein 34, isoform b protein.
          Length = 310

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 1  MVYDDGQKRWVP-SGSSSGLSKVHIYHHTQHNTFRVV--------VINCGIVRGLKYNQA 51
          M Y++  K WV   G+   ++ V +    +   FR+V        ++NC I RG+KY++A
Sbjct: 1  MTYNESTKGWVLLGGNDDSMTNVRLIQDIRRPEFRIVSNRADSTNILNCNIYRGIKYHKA 60

Query: 52 TATFHQWR-DARHVYGLNFSCREDADSFARAMMHTLEIL 89
          T  FHQWR + R VYGLNF   +DA  F   ++  +E L
Sbjct: 61 TPMFHQWRTEQRRVYGLNFENEQDATMFLSIVLQAIETL 99


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
          protein 34, isoform a protein.
          Length = 454

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 1  MVYDDGQKRWVP-SGSSSGLSKVHIYHHTQHNTFRVV--------VINCGIVRGLKYNQA 51
          M Y++  K WV   G+   ++ V +    +   FR+V        ++NC I RG+KY++A
Sbjct: 1  MTYNESTKGWVLLGGNDDSMTNVRLIQDIRRPEFRIVSNRADSTNILNCNIYRGIKYHKA 60

Query: 52 TATFHQWR-DARHVYGLNFSCREDADSFARAMMHTLEIL 89
          T  FHQWR + R VYGLNF   +DA  F   ++  +E L
Sbjct: 61 TPMFHQWRTEQRRVYGLNFENEQDATMFLSIVLQAIETL 99


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.130    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,609,400
Number of Sequences: 27539
Number of extensions: 165592
Number of successful extensions: 409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 8
length of query: 338
length of database: 12,573,161
effective HSP length: 82
effective length of query: 256
effective length of database: 10,314,963
effective search space: 2640630528
effective search space used: 2640630528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)