GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000079-TA|BGIBMGA000079-PA|undefined
         (169 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    26   0.19 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   0.76 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   0.76 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   0.76 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   0.76 
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    23   1.8  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   2.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   4.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   4.1  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 25.8 bits (54), Expect = 0.19
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 68  PKPPIHSNSITNHHGPC--DGSEEYSQPITNNL 98
           P+PP+  NS+   H P   D  E+Y  P    L
Sbjct: 180 PEPPVTFNSLNGAHTPLTDDHDEKYGVPTLEEL 212


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 87  SEEYSQPITNNLRGSQTSLKYDEMGSRISFQSFRSEPVQRHS 128
           S++ S P+T N+ G  T    +  G    +  FR  P++  S
Sbjct: 17  SDDESSPLTENIYGGSTRTVQETKG----WDVFRDPPIKEES 54


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 87  SEEYSQPITNNLRGSQTSLKYDEMGSRISFQSFRSEPVQRHS 128
           S++ S P+T N+ G  T    +  G    +  FR  P++  S
Sbjct: 17  SDDESSPLTENIYGGSTRTVQETKG----WDVFRDPPIKEES 54


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 87  SEEYSQPITNNLRGSQTSLKYDEMGSRISFQSFRSEPVQRHS 128
           S++ S P+T N+ G  T    +  G    +  FR  P++  S
Sbjct: 17  SDDESSPLTENIYGGSTRTVQETKG----WDVFRDPPIKEES 54


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 87  SEEYSQPITNNLRGSQTSLKYDEMGSRISFQSFRSEPVQRHS 128
           S++ S P+T N+ G  T    +  G    +  FR  P++  S
Sbjct: 17  SDDESSPLTENIYGGSTRTVQETKG----WDVFRDPPIKEES 54


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 21  HVQTQLEQEIDLEQKSKMPSIT-SVQESPKSVKRSTSFNRSDCELRRAPKPPIHSNSITN 79
           HVQ +L++EIDL  +     I+ +V +S K + +        CE  R   P   ++ + N
Sbjct: 300 HVQKKLQKEIDLTLQENHGKISYNVLQSMKYLDQVV------CESLRLWPPAPQTDRLCN 353

Query: 80  HHGPCDGSEEYSQPIT 95
            +   + S+ + +  T
Sbjct: 354 KNFVIEASKPHERTFT 369


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/10 (80%), Positives = 10/10 (100%)

Query: 12  LGDLEEMLAH 21
           LGD+EEML+H
Sbjct: 327 LGDVEEMLSH 336


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 70  PPIHSNSITNHHGPCDGSEEYSQ 92
           PP+ + S+ NHH      E++ Q
Sbjct: 155 PPLTTQSMNNHHMGHHMQEQHPQ 177


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 70  PPIHSNSITNHHGPCDGSEEYSQ 92
           PP+ + S+ NHH      E++ Q
Sbjct: 157 PPLTTQSMNNHHMGHHMQEQHPQ 179


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.124    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,343
Number of Sequences: 317
Number of extensions: 1541
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 169
length of database: 114,650
effective HSP length: 53
effective length of query: 116
effective length of database: 97,849
effective search space: 11350484
effective search space used: 11350484
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.8 bits)
S2: 40 (20.2 bits)