Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000079-TA|BGIBMGA000079-PA|undefined
(169 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 32 0.28
11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281... 31 0.64
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 31 0.64
12_02_0619 - 21276591-21276719,21276798-21276920,21277425-212775... 30 0.85
03_03_0126 + 14665374-14665539,14665790-14666127 30 0.85
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 29 1.5
04_04_0150 - 23130038-23130281,23130550-23130762,23130856-23133155 29 2.0
11_01_0419 + 3226224-3226756,3228010-3228169,3228256-3228435,322... 29 2.6
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876... 29 2.6
08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736 28 3.4
06_03_1456 + 30283777-30284325,30284419-30284835,30284980-30285060 28 4.5
04_04_1537 - 34235360-34235486,34236107-34236234,34236344-342364... 28 4.5
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608... 27 6.0
02_01_0489 - 3522907-3523363,3523519-3523610,3525755-3526171,352... 27 6.0
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 27 6.0
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793... 27 7.9
06_02_0196 - 12898050-12898553,12898689-12900824 27 7.9
06_01_0243 - 1837830-1837886,1837969-1838016,1838113-1838255,183... 27 7.9
02_04_0046 + 19211961-19212231,19212651-19212706,19212947-192130... 27 7.9
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 27 7.9
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 31.9 bits (69), Expect = 0.28
Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 4/137 (2%)
Query: 1 MRRSKMNINPDLGDLEEMLAHVQTQLEQEIDLEQKSKMPSITSVQESPKSVK---RSTSF 57
+ ++ + + LE L +++L+ EI Q K ++ ++Q+S S+K
Sbjct: 864 LEQANEELREKISSLERQLEEARSKLQDEIIKLQGEKERALDNLQQSNTSIKTFEEELEK 923
Query: 58 NRSDCELRRAPKPPIHSNSITNHHGPCDGSEEYSQPITNNLRGSQTSLKYDEMGSRISFQ 117
R + + +H SI N + ++ S L+ + D S IS +
Sbjct: 924 QREHNSILQLANDDLH-KSIANLEKELEDTKVSSHAEILALQEQKNKALSDLQQSEISIE 982
Query: 118 SFRSEPVQRHSVLSLPD 134
+FR E Q +S+ D
Sbjct: 983 NFRMELEQGREKISILD 999
>11_01_0370 +
2814888-2814979,2815450-2815620,2815753-2815834,
2816275-2816316,2816397-2816456,2816817-2816913,
2817382-2819024,2819155-2819256,2819369-2819509,
2819625-2819750,2819935-2820096
Length = 905
Score = 30.7 bits (66), Expect = 0.64
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Query: 36 SKMPSITSVQESPKSVKRSTSFNRSDCELRRAPKPPIHSNSITNHHGPCDGSEEYSQPIT 95
+K+ + + S K +K S+S L A N E+Y+ P T
Sbjct: 167 AKLWQLPVISSSEKQIKNSSSQQGRSRPLHGASNVQSTENRSKLFSQFPVTCEQYNHPDT 226
Query: 96 NNLRGSQTSLKYDEMGSRISFQSFRSEPVQRHSVLSLPDKR 136
+ GS TSL GS + + V+ H V S PD R
Sbjct: 227 MAVSGS-TSLNACMNGSLLKIAQLNGQAVREHIVYSKPDVR 266
>08_01_0033 +
244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 30.7 bits (66), Expect = 0.64
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 35 KSKMPSITSVQESPKSVKRSTSFNRSDCELRRAPKPPIHSNSI 77
K + S T V ++P S+ S+S D +R KPP+HS +
Sbjct: 571 KKSLSSSTKV-DAPSSITNSSSSVGEDASIRYDSKPPLHSQRL 612
>12_02_0619 -
21276591-21276719,21276798-21276920,21277425-21277535,
21277887-21277901,21279117-21279188
Length = 149
Score = 30.3 bits (65), Expect = 0.85
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 97 NLRGSQTSLKYDEMGSRISFQSFRSEPVQRHSVLSLPDKRGSTSSLNGRAKT-ATLPRGY 155
N+ ++S+ ++ RISF S RS P Q + K+ + + KT LP G
Sbjct: 32 NVISRRSSVSFNSQ--RISFMSIRSRPSQLRFKICCSAKKETVDKVCNIVKTQLALPEGT 89
Query: 156 GSTKESNWDEYWA 168
T ES + E A
Sbjct: 90 AVTGESKFSELGA 102
>03_03_0126 + 14665374-14665539,14665790-14666127
Length = 167
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 128 SVLSLPDKRGSTSSLNGRAKTATLPRGYGSTKESNWDEYWAK 169
+ L L R STS++ G +T RG+G + N YW K
Sbjct: 13 AALLLFSARSSTSTVAGEHETPPQDRGHGRHYDRNQHRYWLK 54
>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 1 MRRSKMNINPDLGDLEEMLAHVQTQLEQEIDLEQKSKMPSITSVQESPKSVKRSTSFNRS 60
+R K+ + L D+ L H ++QLE DL ++SK I + +S + K+S +
Sbjct: 1009 LRADKVKLEASLQDVSAQLRHYESQLE---DLRKESK-SKIKGLVDSLNASKQSEEMLAA 1064
Query: 61 DCE 63
D E
Sbjct: 1065 DAE 1067
>04_04_0150 - 23130038-23130281,23130550-23130762,23130856-23133155
Length = 918
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 109 EMGSRISFQSFRSEPVQRHSVLSLPDKRGSTSSLNGRAKTATLPRGYGSTKESNW 163
EMG R++ ++F S+P + + + GS N K + + +G K W
Sbjct: 706 EMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGW 760
>11_01_0419 +
3226224-3226756,3228010-3228169,3228256-3228435,
3228525-3228659,3229262-3229344,3229442-3229535,
3229649-3229735
Length = 423
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 71 PIH--SNSITNHHGPCDGSEEYSQPITNNLRGSQ-TSLKYDEMGSRISFQSFRSEPVQRH 127
P+H +++T HH SEE + + + GS ++ + + G R S Q R P +R
Sbjct: 57 PVHVEDSAVTQHHPAVSSSEEEEEELGSGTSGSDGSAAEAADGGRRRSRQGRRRRPQRRR 116
Query: 128 SVLSLP 133
S P
Sbjct: 117 RRGSRP 122
>06_03_1488 +
30484904-30485134,30485239-30487159,30487255-30487691,
30487777-30487983
Length = 931
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 13 GDLEEMLAHVQTQLEQEIDLEQKSKMPSITSVQESPKSVKR 53
G++EE L V+ +L++E+ L+ KS++ + PK + R
Sbjct: 371 GNMEEFLEEVKERLKKELKLKSKSEVVRRSWGTTDPKQIAR 411
>08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736
Length = 869
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 11 DLGDLEEMLAHVQTQLEQEIDLEQKSKMPSI-TSVQESPKSVKRSTSFNRSDC 62
D+ D E+L VQ QLE+ E+KS +P++ T+V +S V+ S + + C
Sbjct: 382 DMEDSYELLCFVQNQLEK----EEKSMIPAVSTTVVDSIFRVQLSATISCRRC 430
>06_03_1456 + 30283777-30284325,30284419-30284835,30284980-30285060
Length = 348
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 4 SKMNINPDLGD----LEEMLAHVQTQLEQEIDLEQKSKMPSITSV 44
SKM+ LGD ++E+L ++ QL++EI+ +Q+ + P + SV
Sbjct: 182 SKMDRTSILGDTIDYMKELLERIR-QLQEEIEEQQQQETPGVLSV 225
>04_04_1537 -
34235360-34235486,34236107-34236234,34236344-34236483,
34236967-34237023,34237358-34237475,34237585-34237734,
34237857-34237941,34238040-34238104,34238351-34238500,
34238835-34238910,34239071-34239150
Length = 391
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 73 HSNSIT---NHHGPCDGSEEYSQPITNNLRGSQTSLKYDEMGSRISFQSFRSEPVQRHSV 129
H N IT + +G + S EY Q I + L Q + DE S + E Q+H+
Sbjct: 243 HQNMITVPRSMNGVIESSTEYVQTIEDELSMKQDESQLDEHKKEEKDCSSKGETAQKHN- 301
Query: 130 LSLPDKRGSTSS 141
S K+G + +
Sbjct: 302 -SSHSKKGKSKT 312
>03_06_0221 +
32458867-32459149,32460271-32460386,32460461-32460807,
32461231-32461411,32461507-32461629,32461828-32462115,
32462536-32462688,32463068-32463169,32463260-32463313,
32463518-32463624,32463867-32463927,32464019-32464150,
32464245-32464382,32464459-32464539,32464635-32464715,
32465133-32465213,32465300-32465413
Length = 813
Score = 27.5 bits (58), Expect = 6.0
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 14 DLEEMLAHVQTQLEQE-----IDLEQKSKMPSITSVQESPKSVKRSTSFNRSDCELRRAP 68
D+ + L HV+T+L++E + LE ++ P IT+ ++ S + L A
Sbjct: 300 DIPDYLKHVETRLQEEHERCILYLEANTRKPLITATEKQLLQRHTSAILEKGFTMLMEAN 359
Query: 69 KPPIHSNSITNHHGPCDGSEEYSQPITNNLRGSQTSLKYDE 109
+ S T D E Q +++ +RG+ + DE
Sbjct: 360 RVKDLSRMYTLFQ-RVDAIELLKQALSSYIRGTGQGIIMDE 399
>02_01_0489 -
3522907-3523363,3523519-3523610,3525755-3526171,
3526488-3526565,3527021-3527292,3529346-3529541
Length = 503
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 66 RAPKPPIHSNSITNHHG------PCDGSEEYSQPITNNLRGS 101
R+P PP+ +SI+ +HG PC S + QP ++ S
Sbjct: 222 RSPLPPLVDSSISFNHGGYEEVLPCFSSSHHQQPSPASMNAS 263
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 4 SKMNINPDLGDLEEMLAHVQTQLEQEIDLEQKSKMPSITSVQESPKSVKRSTSF 57
S+ N+N D ++++A + + ++ +D +Q +KM +QE ++ +F
Sbjct: 245 SRSNLNKDASGCDDLVAGLIKEDKESVDDDQHAKMDLPVKLQELSSLQQKEANF 298
>06_02_0251 -
13478902-13478952,13478989-13479055,13479168-13479379,
13480144-13481540,13481574-13482432,13482537-13482836
Length = 961
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 20 AHVQTQLEQEIDLEQKSKMPSITSVQESP-KSVKRSTSFNRSDCELRRAPKPPIHSNSIT 78
+H +TQ EID + S +SV + P +S+ +S + + P+ I I
Sbjct: 658 SHNETQASSEIDSIGTNDNASTSSVYDLPEESIHQSAKNSTENTSYNEEPEESIIKRKIK 717
Query: 79 NHHGPCDGSE 88
H C+ +
Sbjct: 718 LHQEMCNDKD 727
>06_02_0196 - 12898050-12898553,12898689-12900824
Length = 879
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 39 PSITSVQESPKSVKRSTSFNRSDCELRRAPK 69
P+++S+Q PKS+K + + +D + R PK
Sbjct: 565 PNVSSLQSLPKSMKLLSVLDLTDSSVDRLPK 595
>06_01_0243 -
1837830-1837886,1837969-1838016,1838113-1838255,
1838784-1838982,1839085-1839265,1839857-1840228,
1841453-1841658
Length = 401
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 29 EIDLEQKSKMPSITSVQESPKSVKRSTSFNRSDCELRRAP--KPPIHSNSITNHH 81
++ LEQ + P + +++ESP+ F + L AP + +S HH
Sbjct: 79 QLSLEQTLEEPEVATMEESPEPTTLGDPFTATTSSLPSAPHGTSEVSPSSRLRHH 133
>02_04_0046 +
19211961-19212231,19212651-19212706,19212947-19213011,
19213138-19213212,19213305-19213383,19213591-19213629,
19213712-19213820,19214334-19214452,19215282-19215401,
19215846-19216232
Length = 439
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 7 NINPDLGDLEEMLAHVQTQLEQEIDLEQKSKMPSI 41
++N L +LEE L ++T L+ D K PS+
Sbjct: 359 SLNIPLSELEEKLQMLETSLKDTTDASSSDKPPSL 393
>01_06_1713 -
39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 3 RSKMNINPDLGDLEEMLAHVQTQLEQEIDLEQKSKMPSITSVQESPKSVK 52
R + N + LG+L + L + +QE+ +Q S+++V E K++K
Sbjct: 726 RVEQNEHHKLGELVKKLEQELQESKQELKAKQAQYEKSVSTVSELEKTIK 775
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.124 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,089,342
Number of Sequences: 37544
Number of extensions: 199161
Number of successful extensions: 464
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 21
length of query: 169
length of database: 14,793,348
effective HSP length: 77
effective length of query: 92
effective length of database: 11,902,460
effective search space: 1095026320
effective search space used: 1095026320
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 57 (27.1 bits)
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