Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000079-TA|BGIBMGA000079-PA|undefined
(169 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13560.1 68418.m01566 expressed protein weak similarity to SP... 31 0.31
At4g24240.1 68417.m03479 WRKY family transcription factor contai... 30 0.71
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ... 30 0.71
At5g06100.2 68418.m00678 myb family transcription factor (MYB33)... 30 0.94
At5g06100.1 68418.m00677 myb family transcription factor (MYB33)... 30 0.94
At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing... 30 0.94
At3g12540.1 68416.m01560 expressed protein contains Pfam profile... 29 1.2
At2g15695.1 68415.m01797 expressed protein contains Pfam PF05705... 29 1.6
At5g57090.1 68418.m07128 auxin transport protein (EIR1) identica... 29 2.2
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro... 28 2.9
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 28 3.8
At1g58220.1 68414.m06612 myb family transcription factor contain... 28 3.8
At1g26920.1 68414.m03282 expressed protein Location of EST 228A1... 28 3.8
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co... 27 5.0
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 27 5.0
At1g03905.1 68414.m00375 ABC transporter family protein similar ... 27 6.6
At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related conta... 27 8.7
At1g72410.1 68414.m08374 COP1-interacting protein-related simila... 27 8.7
At1g37045.1 68414.m04623 hypothetical protein 27 8.7
>At5g13560.1 68418.m01566 expressed protein weak similarity to
SP|O42184 Restin (Cytoplasmic linker protein-170)
(CLIP-170) {Gallus gallus}
Length = 679
Score = 31.5 bits (68), Expect = 0.31
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 14 DLEEMLAHVQTQLEQEIDLEQKSKMPSITSVQES---PKSVKRSTSFNRSDCELRRAPKP 70
D+E+M ++ +++E S S+TS + S PKS K S+S + E + KP
Sbjct: 563 DMEKMRQQFESIARPTLEIEIPSPRSSVTSPKSSATSPKSPKPSSSSMNASTESTQTQKP 622
Query: 71 PIHSNSITNHHGPCDGSEEYS 91
+ SNS + S+E++
Sbjct: 623 EL-SNSPQAPNPAAGSSQEFN 642
>At4g24240.1 68417.m03479 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 353
Score = 30.3 bits (65), Expect = 0.71
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 26 LEQEIDLEQKSKMPSITSVQESPKSVKRSTSFNRSDCELRRAPKPPIHSNSITNHHGPCD 85
+E+E+++E+K S ++ + S R C +PP+ N+ N + +
Sbjct: 111 VEEEVEVEEKKPETSSVLTKQKTEQYHGGGSAFRVYCPTPIHRRPPLSHNNNNNQNQTKN 170
Query: 86 GSEEYSQPITNN 97
GS S P+ N
Sbjct: 171 GSSSSSPPMLAN 182
>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
contains Pfam profile: PF01363 FYVE zinc finger
Length = 601
Score = 30.3 bits (65), Expect = 0.71
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 39 PSITSVQESPKSVKRSTSFNRSDCELRRAPKPP--IHSNSITNHHGPCDGSEEYSQPITN 96
PS TS + P S +TS N + P PP IH +++ +G D + Y QP +
Sbjct: 86 PSFTSPSQPPPS-PPATSLNPNSYSTFNQPPPPPTIHPQPLSS-YGSFDSTAPYQQPTSQ 143
Query: 97 NL 98
++
Sbjct: 144 HM 145
>At5g06100.2 68418.m00678 myb family transcription factor (MYB33)
contains Pfam profile: PF00249 myb DNA-binding domain
Length = 520
Score = 29.9 bits (64), Expect = 0.94
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 47 SPKSVKRSTSFNRSDCELRRAPKPPIHSN-SITNHHGPCDGSEEYSQPITNNLRGSQTSL 105
SP+++ ++ SF+ C++ HS I + H P DG YS+P+ ++ S
Sbjct: 260 SPQTISKTCSFS-VPCDVEHPLYGNRHSPVMIPDSHTPTDGIVPYSKPLYGAVKLELPSF 318
Query: 106 KYDE 109
+Y E
Sbjct: 319 QYSE 322
>At5g06100.1 68418.m00677 myb family transcription factor (MYB33)
contains Pfam profile: PF00249 myb DNA-binding domain
Length = 451
Score = 29.9 bits (64), Expect = 0.94
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 47 SPKSVKRSTSFNRSDCELRRAPKPPIHSN-SITNHHGPCDGSEEYSQPITNNLRGSQTSL 105
SP+++ ++ SF+ C++ HS I + H P DG YS+P+ ++ S
Sbjct: 260 SPQTISKTCSFS-VPCDVEHPLYGNRHSPVMIPDSHTPTDGIVPYSKPLYGAVKLELPSF 318
Query: 106 KYDE 109
+Y E
Sbjct: 319 QYSE 322
>At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing
protein / RanBP1 domain-containing protein contains Pfam
profile PF00638: RanBP1 domain
Length = 443
Score = 29.9 bits (64), Expect = 0.94
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 33 EQKSKMPSITSVQESPKSVKRSTSFNRSDCELR-RAPKPPIHSNSITNHHGPCDGSEEYS 91
+ KS PS+ S ++ SF S+ + + PP+ + +H DG +E S
Sbjct: 249 QTKSSQPSLLSGSQAGAISSNQPSFQFSNSQSPFTSAVPPVSIPAKQDHSDDADGGDEQS 308
Query: 92 QPITNNLRGSQ 102
QP + +++ ++
Sbjct: 309 QPSSPSVKKTE 319
>At3g12540.1 68416.m01560 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 503
Score = 29.5 bits (63), Expect = 1.2
Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 16/161 (9%)
Query: 2 RRSKMNINPDLGDLEEMLAHVQTQLEQEIDLEQKSKMPSITSVQESPKSVKRSTSFNRSD 61
R S + + P + +L E LA V+ ++ + LE++ + + E ++ + S + +
Sbjct: 28 RLSLLLLPPQVQELIEELATVEAEI---LCLEKRIQDLKLDVYSEKKENKELEDSIDEGE 84
Query: 62 CELRRAPKPPIHSNSITNHHGPCDGSEEYSQPITNNLRGSQTSLKYDEMGSRISFQSFRS 121
E PK + + H PCD + + + +L+ S Y G + +
Sbjct: 85 EERMMNPKRLLQRQN----HLPCDADNDLIKMRSEDLKQRSKSQSY---GDHHVVKDIQM 137
Query: 122 EPVQRHSVLSLPDKRGSTSSLNGRAKTATLPRGYGSTKESN 162
+ H+ + GST + R ++T G T+E N
Sbjct: 138 NSPRTHASI------GSTMEFSSRIHSSTFSDGMSRTQEKN 172
>At2g15695.1 68415.m01797 expressed protein contains Pfam PF05705:
Eukaryotic protein of unknown function (DUF829)
Length = 420
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 82 GPCDGSE-EYSQPITNNLRGSQTSLKYDEMGSRISFQSFRSEPVQRHSVL 130
GPCD S P +N S S +E R SF+ + + HSVL
Sbjct: 320 GPCDHFFLPSSAPYQSNSNNSDPSSSQEEQRERSSFRPLQPTSINAHSVL 369
>At5g57090.1 68418.m07128 auxin transport protein (EIR1) identical
to auxin transport protein EIR1 [Arabidopsis thaliana]
gi|3377507|gb|AAC39513; identical to root gravitropism
control protein [Arabidopsis thaliana]
gi|4322486|gb|AAD16060
Length = 647
Score = 28.7 bits (61), Expect = 2.2
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 41 ITSVQESPKSVKRSTSFNRSD-CELRRAPKPPIHSNSITNHHGPC---DGSEEYS----- 91
I SVQ S + R++SFN++D + A K P + TN +G G + YS
Sbjct: 244 IYSVQSSREPTPRASSFNQTDFYAMFNASKAPSPRHGYTNSYGGAGAGPGGDVYSLQSSK 303
Query: 92 --QPITNNL--RGSQTSLKYDEMGSRISFQSFRSEPVQRHSVLSLPDKRGSTSSLNGRAK 147
P T+N +T+ K G +S + + + V + + P GSTS +G K
Sbjct: 304 GVTPRTSNFDEEVMKTAKKAGRGGRSMSGELYNNNSVPSYPPPN-PMFTGSTSGASGVKK 362
Query: 148 TATLPRGYG 156
+ G G
Sbjct: 363 KESGGGGSG 371
>At3g25500.1 68416.m03171 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 1051
Score = 28.3 bits (60), Expect = 2.9
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 29 EIDLEQKSKMPSITSVQESPKSVKRSTS-FNRSDCELRRAP--------KPPIHSNSITN 79
E+ L Q + P++TS+ SP++ K+ S + + R P + P HS++ T+
Sbjct: 351 EVGLNQIFRSPTVTSLTTSPENNKKENSPLSSTSTSPERRPNDTPEAYLRSPSHSSASTS 410
Query: 80 HHGPCDGSEEYSQPITNNLR-GSQTSL 105
+ S E +NLR G Q+ L
Sbjct: 411 PYRCFQKSPEVLPAFMSNLRQGLQSQL 437
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 35 KSKMPSITSVQESPKSVKRSTS----FNRSDCELRRAPKPPIHSNSITNHHGPCDGSEEY 90
KS P T P+ K S +N+S + RR+P PP + H P S
Sbjct: 396 KSPSPVPTRPVHKPQPPKESPQPNDPYNQSPVKFRRSPPPPQQPHHHVVHSPPPASSPPT 455
Query: 91 SQPI 94
S P+
Sbjct: 456 SPPV 459
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 120 RSEPVQRHSVLSLPDKRGSTSSLNGR----AKTATLPRGYG 156
++EPV+ S +S+P G +S+LN A A+LPR G
Sbjct: 390 KTEPVKTASTVSMPRPSGISSALNTEPVKTAVAASLPRSSG 430
>At1g26920.1 68414.m03282 expressed protein Location of EST
228A16T7A, gb|N65686
Length = 173
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 33 EQKSKMPSITSVQESPKSVKRSTSFNRSDCELRRAPKPPIHSNSITN 79
EQ++ + T+ ++ P S S S+N+ C L + + H+N +T+
Sbjct: 15 EQETLVEEETNKRQKPTSSSSSASYNQILCLLNDSDEQNQHNNDLTS 61
>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1611
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 84 CDGSEEYSQPITNNLRGSQTSLKYDEMGSRISFQSFRSEPVQRHSVLSLPDKRGSTSSL- 142
C G + N +GS +S G SF S R+ P ++ S SL ++ L
Sbjct: 555 CSGGSSRHRKSNNVFQGSSSSASPRGAGLSRSFSSHRNVPSEKISQSSLTSEKTLEVPLT 614
Query: 143 --NGRAKTATLPRG 154
+G LPRG
Sbjct: 615 EGSGNKLIVKLPRG 628
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 27 EQEIDLEQKSKMPSITSVQESPKSVKRSTSFNRSDCELRRAPKPPIHSNSITNHHGPCDG 86
E++I + KSK ++S K K+ + +P P S H D
Sbjct: 33 EKKISKKHKSKSKEEEKPEKSKKKSKKYEEVEEEEKSPSPSPSPKKSKESKKKHKRSSDE 92
Query: 87 SEEY--SQPIT 95
SEE S+P+T
Sbjct: 93 SEEIVDSKPVT 103
>At1g03905.1 68414.m00375 ABC transporter family protein similar to
NBD-like protein GB:AAD20643
Length = 290
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 28 QEIDLEQKSKMPSITSVQESPKSVKRSTSFNRSDCELRRAPKPPI 72
Q+ +L + SKM I ++ SP + S+ RS+ +L + K P+
Sbjct: 223 QDGELNRLSKMTDIEELKTSPNLLSVVESWLRSEIKLVKKKKKPV 267
>At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related contains
weak similarity to Pre-mRNA cleavage complex II protein
Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens]
Length = 808
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 96 NNLRGSQTSLKYDEMGSRISFQSFRSEPVQRHSVLSLPDKRGSTSSLNGRAKTATLPRGY 155
NNLRG +S + S + F + S+ S PD G T N A + Y
Sbjct: 225 NNLRGINSSARVYGQNSLGGYNDFEDQLESPSSLSSTPD--GFTRRSNDGANPSNQAFNY 282
Query: 156 GSTKESNWDE 165
G + ++ D+
Sbjct: 283 GMGRATSRDD 292
>At1g72410.1 68414.m08374 COP1-interacting protein-related similar
to COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis
thaliana] GI:3327870
Length = 1163
Score = 26.6 bits (56), Expect = 8.7
Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Query: 26 LEQEIDLEQKSKMPSITSVQESPKSVKRSTSFNRSDCELRRAPKPPIHSNSITNHHGPCD 85
++ I+L + + + S P +V +ST R ++ + KP + +SI +
Sbjct: 273 VQDRINLFENKQKENSPSGGSKPVAVTKSTELRRLSSDVSSSEKPILRRSSIVSDMSTDL 332
Query: 86 GSEEYSQPITNNLRGSQTSLKYDEMGSRISFQSFRSEPVQRHSVLSLPDKRGSTSSLNGR 145
SE+ + + + +SL + + +S + + ++ + S +K G + R
Sbjct: 333 ASEKKLESFPEDPSSTSSSLPHTIAQPNFN-ESVKKDDEVKYELKSDSEKVGDEEASRDR 391
Query: 146 AKTA 149
+++
Sbjct: 392 VESS 395
>At1g37045.1 68414.m04623 hypothetical protein
Length = 180
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 101 SQTSLKYDEMGSRISFQSFRSEPVQRHSVLSLPDKRGSTSSLNGRAKTATLPRGYGSTKE 160
SQ S + + SF R+ + + L+ P R + SSL A++ GY K+
Sbjct: 55 SQNSQFQQPLQNNNSFSFTRNFDLASYQDLTAPIPRWNESSLTTSWHAASMESGYEFMKD 114
Query: 161 SNWDEY 166
DE+
Sbjct: 115 DESDEF 120
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.124 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,170,330
Number of Sequences: 28952
Number of extensions: 166913
Number of successful extensions: 455
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 21
length of query: 169
length of database: 12,070,560
effective HSP length: 76
effective length of query: 93
effective length of database: 9,870,208
effective search space: 917929344
effective search space used: 917929344
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 56 (26.6 bits)
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