Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000078-TA|BGIBMGA000078-PA|IPR012496|TMC
         (612 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    26   0.66 
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    23   4.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   8.1  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   8.1  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 24  EFYQELYPGGEQELFDNLQRADAAKLATLLPSKQA--RNTTTVKRARSQTDRRQSTFART 81
           E Y   +PGG          A +     L   +Q   +N   VKR   + D   +T+A  
Sbjct: 453 EIYDRGFPGGLGRAVVPTLDATSYYAKDLEKQRQQCNQNKCPVKRGNGRCDEECNTYACE 512

Query: 82  MQSRDIHLSMLPDLSENLSNEERSWEEIM 110
               D  L + P    N +   R WE  M
Sbjct: 513 FDGNDCSLGINP--WANCTASTRCWEVFM 539


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 7/30 (23%), Positives = 20/30 (66%)

Query: 577 FYLPKHVLDIVYVQTIIWMAMFRKKKLQDY 606
           +YL   V++++YV T+ +   + +++ +D+
Sbjct: 100 YYLLLFVINVLYVLTLCYAVYYWRQQYEDF 129


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 7/16 (43%), Positives = 15/16 (93%)

Query: 200 ISILVIVFLILPKTLL 215
           ++IL+IV++++ KTL+
Sbjct: 250 LAILIIVYILIAKTLM 265


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 291 MAYILVPISWTLLSLIAIVKTAARGFKQKLIES 323
           + +IL+ ++W +L LI ++         KL+ S
Sbjct: 299 LPFILLQVAWIVLHLIRLMYQVTTNLVLKLLTS 331


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,894
Number of Sequences: 317
Number of extensions: 5284
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 5
length of query: 612
length of database: 114,650
effective HSP length: 61
effective length of query: 551
effective length of database: 95,313
effective search space: 52517463
effective search space used: 52517463
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)