Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000078-TA|BGIBMGA000078-PA|IPR012496|TMC
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe...    29   1.4  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    29   1.9  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    28   4.4  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    27   5.8  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    27   5.8  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   5.8  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    27   7.6  

>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 104

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 322 ESEGQFYKYCNLVFGGWDFCIHNDRS--ARIKHQALYNEIKGCIEEERIKEEKQSRSRES 379
           +S G+F+  CN +      C+  DR+  AR+  +      K  IEE R KEE + R    
Sbjct: 25  KSFGKFFGECNTIKYELKACLTKDRNDKARLNRENARMR-KKVIEENRKKEEIEERILTD 83

Query: 380 QILMHLKR 387
           +IL   ++
Sbjct: 84  RILQQERK 91


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 4/118 (3%)

Query: 37  LFDNLQRA--DAAKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTMQSRDIHLSMLPD 94
           LF N+Q +  D   +A L      R        ++Q  R+ S+  +T Q     L+M P 
Sbjct: 179 LFSNVQSSLDDLFSIACLTKIAHRRMNANAA-LKNQATRKPSSSPQTTQDSSPILTMAPS 237

Query: 95  LSENLSNEERSWEEIMQIKALPVPMSQ-KIELKARLQNATKLRLQGFEQLHLRQRKVW 151
              ++ +   S   ++ I     PM+  K  ++A  Q+ T       EQ+ L + +V+
Sbjct: 238 TPVSVGSTPPSTPSVLPIAKQLAPMNVCKAHIQASNQSRTLTTASPPEQIPLMEPQVY 295


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 238 FEKNTTNSNIFLDVIQGTGWMERTILFYGVYTDQIYTY 275
           FEK  T+ +IFL+ + G G + R +  YG + +Q+  +
Sbjct: 898 FEKTETDISIFLEYVSG-GSIGRCLRNYGPFEEQLVRF 934


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 12/83 (14%)

Query: 309 VKTAARGFKQKLIESEGQFYKYCNLVF---GGWDFCIHNDRSARIKHQA--------LYN 357
           V    R F  KL+E   Q  +Y +      GGW   + ++ S + +  A        L+ 
Sbjct: 467 VSEVERTFLTKLLEESAQGIEYTDQKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHE 526

Query: 358 EIKGCIEEERIKEEKQSRSRESQ 380
           E++  +EEE IKE   ++  E+Q
Sbjct: 527 ELRS-LEEESIKESSATQQNENQ 548


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 7/29 (24%), Positives = 19/29 (65%)

Query: 294 ILVPISWTLLSLIAIVKTAARGFKQKLIE 322
           ++ P++W++ ++  +V+    GFK + +E
Sbjct: 338 LVYPVNWSVYTMALLVRARLEGFKSRTVE 366


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 245 SNIFLDVIQGTGWMERTILFYGVYTDQIYTYYVNSLYHTKLFYNMPMAYILVPISW 300
           S IF + I  T W   + +   +      TY+    Y +  F   P  Y ++P+ W
Sbjct: 356 SRIFNETIAETRWDTWSFIAGSLIRLYFLTYFPTVAYMSFQFVAPPTGYEIIPVLW 411


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/29 (34%), Positives = 21/29 (72%)

Query: 293 YILVPISWTLLSLIAIVKTAARGFKQKLI 321
           Y++VP    L+SL+A++++  R +K+ +I
Sbjct: 389 YVVVPPKLRLVSLVALLRSHVRSYKKIII 417


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,638
Number of Sequences: 5004
Number of extensions: 99881
Number of successful extensions: 339
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 7
length of query: 612
length of database: 2,362,478
effective HSP length: 77
effective length of query: 535
effective length of database: 1,977,170
effective search space: 1057785950
effective search space used: 1057785950
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)