BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000078-TA|BGIBMGA000078-PA|IPR012496|TMC (612 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_15718| Best HMM Match : No HMM Matches (HMM E-Value=.) 125 1e-28 SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9) 86 7e-17 SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 1e-13 SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 6e-11 SB_10482| Best HMM Match : TMC (HMM E-Value=0.03) 34 0.29 SB_29004| Best HMM Match : TMC (HMM E-Value=2.7e-14) 34 0.29 SB_30352| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.51 SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62) 33 0.67 SB_26103| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.89 SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 31 2.1 SB_18574| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.7 SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.3 SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.3 SB_56637| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-06) 29 8.3 SB_1063| Best HMM Match : COLFI (HMM E-Value=0) 29 8.3 SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23) 29 8.3 SB_7268| Best HMM Match : DUF472 (HMM E-Value=0.99) 29 8.3 SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41) 29 8.3 >SB_15718| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 712 Score = 125 bits (301), Expect = 1e-28 Identities = 92/358 (25%), Positives = 151/358 (42%), Gaps = 28/358 (7%) Query: 246 NIFLDVIQGTGWMERTILFYGVYTDQIYTYYVNSLYHTKLFYNMPMAYILVPISWTLLSL 305 N L G GW+ T++FY Y + + + YN+P+AY+L +L Sbjct: 201 NAVLQFFTGQGWIGTTLMFYSNYPSK------RLISEEGVTYNLPLAYLLTGGCTLILCF 254 Query: 306 IAIVKTAARGFKQKLIESEGQFYKYCNLVFGGWDFCIHNDRSARIKHQALYNEIKGCIEE 365 ++ K IESEG F Y N VF WD+CI + +AR KH+ + +I I E Sbjct: 255 FLMITNLMGNLKDSYIESEGMFNSYANKVFAVWDYCISEEIAARHKHRIIVQDINSDIAE 314 Query: 366 ERIKEEKQSRSRESQILMHLKRXXXXXXXXXXXXASGFLIYVAFNFSTERLNESIGSNEN 425 E+ K Q+R+R+ + ++ R F++ + F+ E L+ + N Sbjct: 315 EQRKRRVQNRTRKQKCALYSSRIAVNFIVVPALWYVSFVVIIQAIFNPEDLDFTDKGQSN 374 Query: 426 RTRTMPIVYTTMSFNQLENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGYMPPHXXXXXX 485 R + S+ L + I + NL++P +F ++ +E + Sbjct: 375 MERIL------ASYGS------SLLIALAITIPNLLLPLLFEFLSIFEDWSA--EVELAL 420 Query: 486 XXXXXXXXXXXXXXXXQIYLYISTNGIVCAKHNTDTTKLE----CWETYVGQQFYKLILT 541 I LYI+ + K +LE CWE + Q Y L+ Sbjct: 421 NLWRRVFVKLPSVAALMILLYINIDKKTKKKSRNQHYRLEACEQCWEDELAAQMYMLVWM 480 Query: 542 DFAVQFVTTF-LINLPRAFMARHTRSRCLKMFGEQEFYLPKHVLDIVYVQTIIWMAMF 598 DF V +TT L L + F + + C + G Q+F +P++VLD+VY Q +I + F Sbjct: 481 DFFVVILTTLGLETLRKVF---YNKFSCFRRIGMQQFDIPRNVLDLVYGQCLILLGGF 535 >SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9) Length = 646 Score = 86.2 bits (204), Expect = 7e-17 Identities = 55/227 (24%), Positives = 107/227 (47%), Gaps = 19/227 (8%) Query: 252 IQGTGWMERTILFYGVYTDQIYTYYVNSLYHTKLFYNMPMAYILVPISWTLLSLIAIVKT 311 +QG GW+ T++FYG Y+ +I L +L+YNMP AY +V + L L+ + + Sbjct: 289 MQGVGWINTTLMFYGSYSAKIL------LMPDRLYYNMPFAYFVVNGACFLFVLLITLWS 342 Query: 312 AARGFKQKLIESEGQFYK-YCNLVFGGWDFCIHNDRSARIKHQALYNEIKGCIEEERIKE 370 + F++ ++ + Y Y N VFG WD CI +D++A +K + E++ + E+ Sbjct: 343 VSSIFEESYVKEGTRHYNSYSNKVFGSWDMCIVDDQAAELKMRTFLMEVEADLAEDLRLA 402 Query: 371 EKQSRSRESQILMHLKRXXXXXXXXXXXXASGFLIYVAFNFSTERLNESIGSNENRTRTM 430 R+R + + R +G++IY E S+ S ++ ++ Sbjct: 403 SLAKRTRLEKCQTYSIRALINLVVIGLSAVAGYVIY-------EAAQLSLKSGQSSSQLS 455 Query: 431 PIVYTTMSFNQLENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGYMP 477 P + ++ +L + + + +LN ++P +F Y+ E + P Sbjct: 456 P-----TNQKEMIELLKGYASSLTLSILNAVLPALFFYLAHLEDWNP 497 Score = 44.8 bits (101), Expect = 2e-04 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 4/105 (3%) Query: 118 PMSQKIELKARLQNATK---LRLQGFEQLHLRQRKVWHRFRIGCTETFSKLELWQTPMRE 174 P+ +++ + RL++AT L F LR R +T L+LW+ ++E Sbjct: 103 PLHERLTERKRLRSATAHDPRSLSCFTTWRLRVAMHAKRAYKKARDTVH-LDLWRGHLKE 161 Query: 175 IEGKFGTGVVSYXXXXXXXXXXXXTISILVIVFLILPKTLLTERV 219 IEG FG G++SY I ++ + FL++P+ + T+ + Sbjct: 162 IEGTFGNGILSYFTFLKWLLLLNGYIFLVTLAFLVIPQAIHTQEI 206 >SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1291 Score = 75.8 bits (178), Expect = 1e-13 Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 22/235 (9%) Query: 316 FKQKLIESEGQFYKYCNLVFGGWDFCIHNDRSARIKHQALYNEIKGCIEEERIKEEKQSR 375 F++ IE G FY YCN F WD+CI ++ +AR+K Q + +IK + EE E+ ++R Sbjct: 1071 FQESYIEGGGTFYSYCNKAFASWDYCIDDENTARVKSQNIVQDIKAGLAEEARLEKVRNR 1130 Query: 376 SRESQILMHLKRXXXXXXXXXXXXASGFLIYVAFNFSTERLNESIGSNENRTRTMPIVYT 435 +R + ++ R + + IY+A ST+ + E ++ M I+ Sbjct: 1131 TRGQKCRLYTIRATCTLLVMGLLGGAVYAIYLAVEVSTDPKVQ-----EGKSAFMVILIR 1185 Query: 436 TMSFNQLENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGYMPPHXXXXXXXXXXXXXXXX 495 + S + I LNL++P F + +E + P Sbjct: 1186 SAS-------------SLTITGLNLLLPPFFILVSNFEDWSPRFQVNISLWRTVLLRLAS 1232 Query: 496 XXXXXXQIYLYISTNGIVCAKHNTDTTKLECWETYVGQQFYKLILTDFAVQFVTT 550 +Y+ + G C + WE + Q Y LI DF V TT Sbjct: 1233 IAVLIITLYVDV---GKKCDDGEKSCCQ-NSWENQIASQMYMLIWIDFFVVIATT 1283 Score = 68.5 bits (160), Expect = 1e-11 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 6/157 (3%) Query: 107 EEIMQIKALPVPMSQKIELKARLQNATKLR-LQGFEQLHLRQRKVWHRFRIGCTETFSKL 165 E+ ++KA+ PM QK E+K K+R + ++ L+ WHR + L Sbjct: 925 EDFQEVKAVAAPMQQKREMKKNQTAGQKIRRISCWKATKLKIAMGWHRLTGRIGDALRDL 984 Query: 166 ELWQTPMREIEGKFGTGVVSYXXXXXXXXXXXXTISILVIVFLILPKTLLTERVYECDET 225 ELW+ M+EIEG+FG GV+SY I +L F +P L++E V + T Sbjct: 985 ELWKGSMKEIEGRFGNGVLSYFVFLKWLMFVNLFIFLLTFGFTSVP-ALVSEPVAAPNNT 1043 Query: 226 EANSTVCCSIAYFEKNTTNSNIFLDVIQGTGWMERTI 262 NS + Y +K+ ++ LD I G + E I Sbjct: 1044 --NSCTYSTDTYTDKSP--PDLVLDFITGVSFQESYI 1076 >SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 757 Score = 66.5 bits (155), Expect = 6e-11 Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 27/217 (12%) Query: 98 NLSNEERSWEEIMQIKALPVPMSQKIELKARLQNATKLRLQGFEQLHLRQRKVWHRFRIG 157 NL + R+ +E+ + + Q + A +N +K +L ++ LR W F+ G Sbjct: 228 NLLHRNRNIKEVSTTISRKRILRQSVNAAAG-RNESKKKLSAWKSFKLRFSMGWQHFKDG 286 Query: 158 CTETFSKLELWQTPMREIEGKFGTGVVSYXXXXXXXXXXXXTISILVIVFLILPKTLLTE 217 E L+LW+ ++ I+GKFG+GV+SY I+ L + FL +P+ Sbjct: 287 TKEMLYSLDLWRGHLKVIQGKFGSGVLSYFVLLRWLFLLNVLITTLTLFFLFIPQI---- 342 Query: 218 RVYECDETEANSTVCCSIAYFEKNTTNSNIFLDVIQGTGWMERTILFYGVYTDQIYTYYV 277 VY S Y +++ T +++I G G+ + +YG YT+ +T + Sbjct: 343 -VYN-----------PSTKYNQESFTG----VELITGDGYFTNSEAYYGWYTN--HTIGM 384 Query: 278 NSLYHTKLFYNMPMAYILVPISWTLLSLIAIVKTAAR 314 S L Y MP+AY+ V ++ LL L ++ + R Sbjct: 385 GS----GLVYKMPLAYLCVGGAYLLLCLAILIYSTDR 417 Score = 63.3 bits (147), Expect = 5e-10 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 6/161 (3%) Query: 439 FNQL--ENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGYMPPHXXXXXXXXXXXXXXXXX 496 FN L + L + L I + LN ++P F + E Y P Sbjct: 598 FNDLKTDETLKKLLLPIVVSGLNFVLPMTFRIIASLEAYKHPRSAIQISLARTALLKLVS 657 Query: 497 XXXXX-QIYLYIST--NGIVCAKHNTDTTKLECWETYVGQQFYKLILTDFAVQFVTTFLI 553 ++L +S G+ K + +CWETY+G FY+L++ DF +++F Sbjct: 658 LGMILVSLFLDVSRCRQGLPLGKDKCLSLMKQCWETYIGIVFYRLVIVDFVFLLLSSFFG 717 Query: 554 NLPRAFMARHTRSRCLKMFGEQEFYLPKHVLDIVYVQTIIW 594 R +A + C G F + ++VLD+VY Q++ W Sbjct: 718 EFIRRIVADNI-GWCKMKVGPPGFDISRNVLDLVYAQSLCW 757 Score = 42.7 bits (96), Expect = 8e-04 Identities = 15/56 (26%), Positives = 35/56 (62%) Query: 305 LIAIVKTAARGFKQKLIESEGQFYKYCNLVFGGWDFCIHNDRSARIKHQALYNEIK 360 ++ ++ + A ++ I + +F Y + VF WD+CI N +A++K ++++N++K Sbjct: 547 MVRLMVSMAESYRDNYIYAGDEFSFYTSKVFCSWDYCITNIDAAKLKEKSIFNDLK 602 >SB_10482| Best HMM Match : TMC (HMM E-Value=0.03) Length = 57 Score = 34.3 bits (75), Expect = 0.29 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 538 LILTDFAVQFVTTFLINLPRAFMARHTRSRCLKMFGEQEFYLPKHVLDIVYVQTII 593 LI DF V TT + + +HTR K+ EF +PK+VLD+VY Q ++ Sbjct: 2 LIWIDFFVVIATTLGMETILRLLFKHTRL-FRKLNVMPEFQIPKNVLDLVYGQCLL 56 >SB_29004| Best HMM Match : TMC (HMM E-Value=2.7e-14) Length = 119 Score = 34.3 bits (75), Expect = 0.29 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Query: 562 RHTRSRCLKMFGEQEFYLPKHVLDIVYVQTIIWMAMF 598 +HTR K+ EF +PK+VLD+VY Q ++W+ F Sbjct: 5 KHTRL-FRKLNVMPEFQIPKNVLDLVYGQCLLWIGTF 40 >SB_30352| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 124 Score = 33.5 bits (73), Expect = 0.51 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 41 LQRADAAKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTMQSRD--IHLSMLPDLSEN 98 + RA ++ T+LPS ++ N V+R + + R + SRD H M DL+++ Sbjct: 20 ISRAPNSRQVTILPSSRSPNAAFVRRVQKRL--RDWVPEVFIHSRDTITHSKMAIDLNKH 77 Query: 99 LSNEERSWEEIMQIKA 114 S +++W++I K+ Sbjct: 78 RSELQKTWQDIFDGKS 93 >SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62) Length = 526 Score = 33.1 bits (72), Expect = 0.67 Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 7/68 (10%) Query: 243 TNSNIFLDVIQGTGWMERTILFYGVYTDQIYTYYVNSLYHTKLFYNMPMAYILVPISWTL 302 ++++ + +I G +E + LFYG Y+++ SL + Y +P+AYI+V + + Sbjct: 379 SSASSLIAIIDAKGHLEYSFLFYGYYSNK-------SLQIGNVRYPLPLAYIVVFLGTYV 431 Query: 303 LSLIAIVK 310 S++ I++ Sbjct: 432 FSVLTILR 439 >SB_26103| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1176 Score = 32.7 bits (71), Expect = 0.89 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 47 AKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTMQSRDIHLSMLPDLSENLSNEERSW 106 AKL ++ +++ KR S D + + + + PDL + + +ER Sbjct: 784 AKLEQMIDARKEPKIRWEKRLGSVIDLNDPALTKLEEEFE-NPKAEPDLEKLAALQERIL 842 Query: 107 EEIMQIKALPVPMSQKIELKARLQN 131 + + Q+KA+P + KIE K + N Sbjct: 843 KVLSQVKAIPAEVKDKIETKFKRHN 867 >SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) Length = 591 Score = 31.5 bits (68), Expect = 2.1 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 7/116 (6%) Query: 34 EQELFDNLQRADAAKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTMQSRD-IHLSML 92 E+EL + Q AD+ LA + P A+ Q + A +Q R+ ++ M Sbjct: 124 EEELNEEKQNADSMALAVISPDVNDTTMALEVAAQQQIKELEKKQAAKIQHREALYAEMR 183 Query: 93 PDLSENLS-----NEERSWEEIMQIKALPVPM-SQKIELKARLQNATKLRLQGFEQ 142 E +S E R E I + K + V +Q+ LK LQ K +Q E+ Sbjct: 184 KKEEERMSRERKERERRQQEFIKEQKDVAVQQKAQQESLKETLQEQEKETIQQLEE 239 >SB_18574| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 157 Score = 30.3 bits (65), Expect = 4.7 Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 46 AAKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTMQSRDIHLSMLPDLSENLSNEERS 105 AAK A + ++ + + ++ +S A + IH S+L DL++ + +ER+ Sbjct: 61 AAKTANTASNAKSEGISDTAKDLLDFNKNESKAAEPEEQHSIHESLLDDLAKPIDTKERT 120 Query: 106 WEEIMQ 111 E + Q Sbjct: 121 AEPVNQ 126 >SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 277 Score = 29.9 bits (64), Expect = 6.3 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 18 WEEAGGEFYQELYPGGEQ--ELFDNLQRADAAKLATLLPSKQARNTTTVKRARSQTDRRQ 75 W + E QEL+ ++ + F+ +++ +L +KQ+ + KR RS+T RR+ Sbjct: 190 WRASDDEILQELHKQRKEMKQSFEEAKQSFEEAKQSLKEAKQSFEGSETKRRRSETKRRR 249 Query: 76 STFAR 80 S R Sbjct: 250 SETKR 254 >SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2848 Score = 29.9 bits (64), Expect = 6.3 Identities = 25/104 (24%), Positives = 53/104 (50%), Gaps = 6/104 (5%) Query: 65 KRARSQTDRRQSTFARTMQSRDIHLSMLPDLSENLSNEERSWEEIMQIK--ALPVPMSQK 122 ++ R + +RR + + +++ HL ++ L ++++EE ++ + AL ++++ Sbjct: 1690 RQKREEEERRVAEMEQVKVAQEQHL--YAQETDELEQLKKTYEERIEREKGALEASIARR 1747 Query: 123 IELKARLQNATKLRLQGFEQLHLRQRKVWHRFRIGCTETFSKLE 166 E + R + A + + EQL LRQ + R R G E + K E Sbjct: 1748 KEEERRAEEAARRLQESQEQLQLRQEALRIRKRQG--EAYEKEE 1789 >SB_56637| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-06) Length = 269 Score = 29.5 bits (63), Expect = 8.3 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 6/44 (13%) Query: 431 PIVYTTM-----SFNQLENVLMEFLPFICIVVLNLIIPEIFSYM 469 P++Y T+ SFN + N+L+ PF IV+ +L P I+S+M Sbjct: 158 PVLYYTIAAVLGSFNSVPNILVTLSPFF-IVIGSLANPLIYSFM 200 >SB_1063| Best HMM Match : COLFI (HMM E-Value=0) Length = 216 Score = 29.5 bits (63), Expect = 8.3 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Query: 323 SEGQFYKYCNLVFGGWDFCIHNDRSARIKHQALYNEIKG 361 SE +CN GG + CIH D+ R + ++++KG Sbjct: 56 SEDAIEVFCNFTSGG-ETCIHPDKRTRTGERKHWSKVKG 93 >SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23) Length = 335 Score = 29.5 bits (63), Expect = 8.3 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 6/44 (13%) Query: 431 PIVYTTM-----SFNQLENVLMEFLPFICIVVLNLIIPEIFSYM 469 P++Y T+ SFN + N+L+ PF IV+ +L P I+S+M Sbjct: 224 PVLYYTIAAVLGSFNSVPNILVTLSPFF-IVIGSLANPLIYSFM 266 >SB_7268| Best HMM Match : DUF472 (HMM E-Value=0.99) Length = 554 Score = 29.5 bits (63), Expect = 8.3 Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 46 AAKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTMQSRDIHLSMLPDLSENLSNEERS 105 AAK A + + + + + +S + IH S+L DL+++L +ER+ Sbjct: 61 AAKTANTASNAKPEGVSDTAKDLLDFNNNESKAEEPKEQHSIHESLLDDLAKSLDTKERT 120 Query: 106 WEEIMQ 111 E + Q Sbjct: 121 AEPVNQ 126 >SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41) Length = 653 Score = 29.5 bits (63), Expect = 8.3 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 315 GFKQKLIESEGQFYKYCNLVFG-GWDFCIHNDRSARIKHQALYNEIKGC 362 GF+ K + S ++YC ++ W F HN R +HQ K C Sbjct: 79 GFQGKNVSSFDHHHRYCIIIVTVSWSFDHHNHHRRRRRHQHHKCLFKSC 127 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.324 0.137 0.414 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,739,251 Number of Sequences: 59808 Number of extensions: 663568 Number of successful extensions: 2185 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 2147 Number of HSP's gapped (non-prelim): 35 length of query: 612 length of database: 16,821,457 effective HSP length: 86 effective length of query: 526 effective length of database: 11,677,969 effective search space: 6142611694 effective search space used: 6142611694 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.6 bits) S2: 63 (29.5 bits)
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