Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000078-TA|BGIBMGA000078-PA|IPR012496|TMC
(612 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20450.1 68418.m02431 expressed protein weak similarity to my... 35 0.14
At4g02900.1 68417.m00392 early-responsive to dehydration protein... 35 0.14
At4g15430.1 68417.m02360 early-responsive to dehydration protein... 35 0.18
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 33 0.55
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 32 0.97
At3g21620.1 68416.m02727 early-responsive to dehydration protein... 32 1.3
At1g62320.1 68414.m07032 early-responsive to dehydration protein... 31 1.7
At1g32090.1 68414.m03949 early-responsive to dehydration protein... 31 2.2
At4g32620.1 68417.m04644 expressed protein predicted protein T10... 30 3.9
At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR... 30 3.9
At3g03130.1 68416.m00309 expressed protein ; expression supporte... 30 5.2
At4g22120.1 68417.m03198 early-responsive to dehydration protein... 29 6.8
>At5g20450.1 68418.m02431 expressed protein weak similarity to
myosin [Arabidopsis thaliana] GI:433663
Length = 341
Score = 35.1 bits (77), Expect = 0.14
Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 34 EQELFDNLQRADAAKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTMQSRDIHLSMLP 93
+ E F++L A A+L +QA ++ A S+ + R S A +++ + L
Sbjct: 43 DTEKFNSLTSEVEALKASLQSERQAAED--LRNAFSEAEARNSELATNLENVTRRVDQLC 100
Query: 94 DLSENLSNEERSWEEIMQIKALPVPMSQKIELKARLQNATK 134
+ S +L +E+++ E++ KAL + ++ +EL +L+N T+
Sbjct: 101 E-SASLQSEQQAAEDLR--KALSLAEARNLELTTKLENVTR 138
>At4g02900.1 68417.m00392 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 785
Score = 35.1 bits (77), Expect = 0.14
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 418 ESIGSNENRTRTMPIVYTTMSFNQLENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGY 475
+S+ + E + +P + + +++V+ FLP I + + +I+P I M + EGY
Sbjct: 394 QSLANLEGIQKVLPFLKPVIEMKTVKSVIQGFLPGIALKIFLIILPTILMTMSQIEGY 451
>At4g15430.1 68417.m02360 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 756
Score = 34.7 bits (76), Expect = 0.18
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 418 ESIGSNENRTRTMPIVYTTMSFNQLENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGYM 476
+S+ + E + P + + L++++ FLP I + + L +P I M ++EG++
Sbjct: 391 QSLANIEGIEKAFPFLKPLIEVKLLKSIIQGFLPGIALKIFLLFLPRILMQMSKFEGFV 449
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 33.1 bits (72), Expect = 0.55
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 15 HEGWEEAGGEFYQELYPGGEQ-ELFDNLQRADAAKLATLLPSKQARNTT 62
H GW ++ +YQE G EL + + AD ++ TLLPS++++ T
Sbjct: 571 HYGWLQSLEAYYQEAGRAGRDGELAECVLYADLSRAPTLLPSRRSKEQT 619
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 32.3 bits (70), Expect = 0.97
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 56 KQARNTTTVKRAR-SQTDRRQSTFARTMQSRDIHLSMLPDLSENLSNE-ERSWEEIMQIK 113
KQAR ++ +T+RR + + SR+ + L + E+L NE ER +E I+
Sbjct: 303 KQAREMLEEYMSKMEETERRMQETGKDVASRESAIVDLEETVESLRNEVERKGDE---IE 359
Query: 114 ALPVPMSQKIELKARLQNATKLRL 137
+L MS IE+K RL N KLR+
Sbjct: 360 SLMEKMS-NIEVKLRLSN-QKLRV 381
>At3g21620.1 68416.m02727 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 756
Score = 31.9 bits (69), Expect = 1.3
Identities = 11/59 (18%), Positives = 32/59 (54%)
Query: 418 ESIGSNENRTRTMPIVYTTMSFNQLENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGYM 476
+++ + E + +P + + +++ + FLP I + + +++P I M ++EG++
Sbjct: 394 QTLANIEGIEKAVPFLKPLIEVKTVKSFIQGFLPGIALKIFLIVLPSILMLMSKFEGFI 452
>At1g62320.1 68414.m07032 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 769
Score = 31.5 bits (68), Expect = 1.7
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 403 FLIYVAFNFSTE------RLNESIGSNENRTRTMPIVYTTMSFNQLENVLMEFLPFICIV 456
F++++AF F T +S+ S E ++ P + + +++++ FLP I +
Sbjct: 373 FVMHIAFFFLTFFFIIPIAFVQSLASIEGIEKSAPFLSPIVKNKLMKSLIQGFLPGIVLK 432
Query: 457 VLNLIIPEIFSYMIRYEGYM 476
+ + +P I M ++EG++
Sbjct: 433 LFLIFLPTILMIMSKFEGFI 452
>At1g32090.1 68414.m03949 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 806
Score = 31.1 bits (67), Expect = 2.2
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 418 ESIGSNENRTRTMPIVYTTMSFNQLENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGYM 476
+S+ + E R P + + +++ L FLP + + + I+P + M + EGY+
Sbjct: 396 QSLANLEGLDRVAPFLRPVTRLDFIKSFLQGFLPGLALKIFLWILPTVLLIMSKIEGYI 454
>At4g32620.1 68417.m04644 expressed protein predicted protein
T10M13.8, Arabidopsis thaliana
Length = 1544
Score = 30.3 bits (65), Expect = 3.9
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 66 RARSQTDRRQSTFARTMQSRDIHLSMLPDLSENLSNEERSW 106
+++SQTD T +R +S+D+H P S+ L ++ +W
Sbjct: 859 KSKSQTDEPIITSSRAQESKDLH---TPSQSQQLGSDSENW 896
>At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1109
Score = 30.3 bits (65), Expect = 3.9
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 84 SRDIHLSMLPDLSENLSNEERSWEEIMQIKALPVPMSQKIELKARLQNATKLRLQGFEQL 143
SR +HL LPDLS N +N ER E+ +AL V + + I +L+N E +
Sbjct: 631 SRSVHLKELPDLS-NATNLERL--ELCDCRAL-VELPKSIGNLHKLENLVMANCISLEVI 686
Query: 144 --HLRQRKVWHRFRIGCT 159
H+ + H GC+
Sbjct: 687 PTHINLASLEHITMTGCS 704
>At3g03130.1 68416.m00309 expressed protein ; expression supported
by MPSS
Length = 520
Score = 29.9 bits (64), Expect = 5.2
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 54 PSKQARNTTTVKRARSQTDRRQSTFARTMQSRDIHLSMLPDLSENLSNE-ERSWEEIMQI 112
P+ ARN + R ++T RR+ST T QS ++ +S++L+ E ++ +++ +
Sbjct: 54 PTSVARNLPSAARTAARTTRRKSTKDET-QSSELVTRSCYVVSKSLAGEMDQENKDMNML 112
Query: 113 KALPVPMSQKIEL 125
+ VP S+ ++L
Sbjct: 113 QNPSVPQSRAVKL 125
>At4g22120.1 68417.m03198 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 771
Score = 29.5 bits (63), Expect = 6.8
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 418 ESIGSNENRTRTMPIVYTTMSFNQLENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGY 475
+S+ + E + P + + +++V+ FLP I + + +P I M ++EG+
Sbjct: 397 QSLATIEGIVKAAPFLKFIVDDKFMKSVIQGFLPGIALKLFLAFLPSILMIMSKFEGF 454
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.324 0.137 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,739,456
Number of Sequences: 28952
Number of extensions: 484255
Number of successful extensions: 1432
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 12
length of query: 612
length of database: 12,070,560
effective HSP length: 85
effective length of query: 527
effective length of database: 9,609,640
effective search space: 5064280280
effective search space used: 5064280280
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)
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