Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000078-TA|BGIBMGA000078-PA|IPR012496|TMC
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0340 + 29389314-29389627,29389966-29390112,29390654-293907... 35 0.17
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 35 0.17
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 33 0.88
05_04_0203 + 19016547-19016860,19017020-19017169,19017946-190180... 33 0.88
05_01_0317 - 2481308-2481350,2481611-2481687,2481765-2481831,248... 32 1.2
02_05_0663 + 30713902-30714190,30714645-30715054,30715699-30716580 31 2.0
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 29 8.2
09_06_0247 + 21844311-21845646,21845991-21846118 29 8.2
09_03_0097 + 12335425-12336197,12336438-12336618,12337409-123375... 29 8.2
08_01_0154 + 1212989-1213054,1213197-1213394,1213424-1213477,121... 29 8.2
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 29 8.2
01_06_0543 + 30110477-30110612,30110935-30111064,30111173-30111803 29 8.2
>05_07_0340 +
29389314-29389627,29389966-29390112,29390654-29390789,
29391098-29391199,29391801-29391920,29392033-29392113,
29392578-29392918,29393069-29393314,29394195-29394519,
29395123-29395356,29395437-29395691
Length = 766
Score = 35.1 bits (77), Expect = 0.17
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 418 ESIGSNENRTRTMPIVYTTMSFNQLENVLMEFLPFICIVVLNLIIPEIFSYMIRYEG 474
+S+ S E + +P + + + +++ + FLP I + V +++P I +M ++EG
Sbjct: 393 QSLASLEGIEKALPFLKPLIKIDVIKSFIQGFLPGIALKVFLILLPTILMFMSKFEG 449
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 35.1 bits (77), Expect = 0.17
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 97 ENLSNEERSWEEIMQIKALPVPMSQKIELKARLQNATKLRLQGFEQLHLRQRKVWHRFRI 156
+N S E+ + +++ L +++ + + R QNA ++ FE +QRK++H
Sbjct: 784 QNQSKEQEQERRMQKLRELRKKKNKRTQRRKRKQNAQVMKQHQFE----KQRKLYHAGSF 839
Query: 157 GCTETFSKLELWQTPMREIEGKFGTGVVSY 186
++++ + E+ + G GT V Y
Sbjct: 840 TNSQSYVRSEIHHHLSQHFSGTIGTPVAPY 869
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 32.7 bits (71), Expect = 0.88
Identities = 23/72 (31%), Positives = 33/72 (45%)
Query: 73 RRQSTFARTMQSRDIHLSMLPDLSENLSNEERSWEEIMQIKALPVPMSQKIELKARLQNA 132
R+ S A + SR+ SM D + N ++ E + + PV S +EL RL
Sbjct: 779 RKHSMDASSSDSREASTSMPADGNSMSVNIPKATEGVEYGRQAPVASSTLVELTTRLDFF 838
Query: 133 TKLRLQGFEQLH 144
+ R Q EQLH
Sbjct: 839 KERRSQLMEQLH 850
>05_04_0203 +
19016547-19016860,19017020-19017169,19017946-19018081,
19018222-19018323,19018556-19018675,19018800-19018880,
19019041-19019381,19020296-19020589,19020701-19021025,
19021167-19021400,19021506-19021760
Length = 783
Score = 32.7 bits (71), Expect = 0.88
Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 404 LIYVAFNFSTE-RLNESIGSNENRTRTMPIVYTTMSFNQLENVLMEFLPFICIVVLNLII 462
L ++ F F + +S+ + ++ R +P + + N L++++ FLP I + + +++
Sbjct: 379 LFFLTFFFMIPIAIVQSMANLDDIERMLPFLKPIIERNSLKSIVQGFLPGIALKIFLILL 438
Query: 463 PEIFSYMIRYEGY 475
P M + EG+
Sbjct: 439 PTFLVMMSKIEGH 451
>05_01_0317 -
2481308-2481350,2481611-2481687,2481765-2481831,
2482756-2482878,2482968-2483087,2483557-2483642,
2483960-2484070,2484194-2484274,2484475-2484546,
2484631-2484809,2485257-2485485
Length = 395
Score = 32.3 bits (70), Expect = 1.2
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 24 EFYQELYPGGEQ-ELFDNLQRADAAKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTM 82
+F+ + G E E D Q ADA + +K+ KRAR + R A+ M
Sbjct: 225 KFFLDADDGDEAVEEGDEDQAADALAVQRKTKTKRVTRVELNKRARRKERLRAEAEAKKM 284
Query: 83 QSRDIHLSMLPDLSENLSNEERSWEE 108
++ + LPD+ ++ E+ E+
Sbjct: 285 ENLSKEIDSLPDIINEIAKEDEEKEK 310
>02_05_0663 +
30713902-30714190,30714645-30715054,30715699-30716580
Length = 526
Score = 31.5 bits (68), Expect = 2.0
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 28 ELYPGGEQELFDNLQRADAAKLATLLPSKQARNTTTVKRARSQTD 72
+L P Q LF ++ ADAA +A LL A TT A +QTD
Sbjct: 2 DLPPLSHQALFAAVRSADAAAVAGLLADAGASGPTTQALAAAQTD 46
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 29.5 bits (63), Expect = 8.2
Identities = 13/59 (22%), Positives = 29/59 (49%)
Query: 418 ESIGSNENRTRTMPIVYTTMSFNQLENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGYM 476
+S+ + E + P + + +++ L FLP + + + I+P + M + EGY+
Sbjct: 391 QSLANLEGIEKVAPFLRPVIDTPVVKSFLQGFLPGLALKIFLYILPTVLMIMSKVEGYV 449
>09_06_0247 + 21844311-21845646,21845991-21846118
Length = 487
Score = 29.5 bits (63), Expect = 8.2
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 242 TTNSNIFLDVIQGTGWMERTILFYGVYTDQIY--TYYVNSLYHTKLFYN 288
TT+ +F G+++ ++F V++DQIY Y+ +S KL +N
Sbjct: 84 TTDPAVFFAKEPAVGFVDADVVFLRVHSDQIYDLIYHASSRPSLKLIHN 132
>09_03_0097 +
12335425-12336197,12336438-12336618,12337409-12337572,
12338132-12338393,12338488-12338604
Length = 498
Score = 29.5 bits (63), Expect = 8.2
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 502 QIYLYISTNGIVCAKHNTDTTKLECWETYVGQQFYKLILTDFAVQFVTTFLINLPRAFMA 561
+I+ + N + AKH + ++ + G F+ I+T T ++L R +
Sbjct: 355 KIFTQVCINSVYLAKHRSGNYIVQDVLEF-GHPFHLEIITSC----FKTHYVDLARQKYS 409
Query: 562 RHTRSRCLKMFGEQEFYL--PKHVLDIVYVQTII 593
+CLK+FG+ E YL + VLD+ + + ++
Sbjct: 410 SRVVEKCLKVFGDLEQYLIVCELVLDLDHFRDLV 443
>08_01_0154 +
1212989-1213054,1213197-1213394,1213424-1213477,
1215014-1215241
Length = 181
Score = 29.5 bits (63), Expect = 8.2
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 81 TMQSRDIHLSMLPDLSENLSNEERSWEEIMQIKALPVPMSQK 122
T ++R+ LS+LP+ E N++R WE ++IK VP K
Sbjct: 57 TGKNRNTSLSVLPNKREREKNKDREWEP-LEIKFHFVPNRSK 97
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 29.5 bits (63), Expect = 8.2
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 36 ELFDNLQRAD---AAKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTMQSRDIHLSML 92
+L +N QR + A+ + LL +KQ+ ++TT +A + + R ++ + D +++L
Sbjct: 1277 KLLENAQRLEKHATARESLLLKTKQSHDSTT--KALVEAESRNRELTKSFEDSDRKINLL 1334
Query: 93 PDLSENLSNEERSWEEIMQIK 113
D L + +++I+
Sbjct: 1335 EDSVNRLEERIAEKDSLLEIE 1355
>01_06_0543 + 30110477-30110612,30110935-30111064,30111173-30111803
Length = 298
Score = 29.5 bits (63), Expect = 8.2
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 24 EFYQELYPGGEQELFDNLQRADAAKLATLLPSKQARNT-TTVKRARSQTDRRQSTFARTM 82
+ Y EL EQ+ + + A A AT S + +T TT A S TD S+
Sbjct: 182 QLYAELMGLIEQQQYSTITAA-AVDAATTTTSWSSPSTGTTSPTASSSTDGSSSSSNLPW 240
Query: 83 QSRDIHLS-MLPDLSEN 98
+ D+H S M+P LSE+
Sbjct: 241 PAVDVHDSTMMPPLSES 257
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.137 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,062,132
Number of Sequences: 37544
Number of extensions: 547337
Number of successful extensions: 1573
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1563
Number of HSP's gapped (non-prelim): 15
length of query: 612
length of database: 14,793,348
effective HSP length: 86
effective length of query: 526
effective length of database: 11,564,564
effective search space: 6082960664
effective search space used: 6082960664
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 63 (29.5 bits)
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