Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000078-TA|BGIBMGA000078-PA|IPR012496|TMC
(612 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr... 60 3e-09
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 33 0.44
Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical pr... 30 5.5
Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical pr... 30 5.5
AC006777-6|AAK72307.1| 517|Caenorhabditis elegans Hypothetical ... 30 5.5
Z82268-6|CAB05194.1| 163|Caenorhabditis elegans Hypothetical pr... 29 9.6
Z50742-1|CAA90614.2| 605|Caenorhabditis elegans Hypothetical pr... 29 9.6
AL021466-1|CAA16282.1| 308|Caenorhabditis elegans Hypothetical ... 29 9.6
>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical
protein B0416.1 protein.
Length = 1203
Score = 60.5 bits (140), Expect = 3e-09
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 10/203 (4%)
Query: 168 WQTPMREIEGKFGTGVVSYXXXXXXXXXXXXTISILVIVFLILPKTLLTERVYECDETEA 227
W+ +R+IE FG+ V SY TI+ ++ +F+++P+ L R D+
Sbjct: 166 WEAKIRKIESHFGSVVSSYFTFHRWVLGVNITITFIMCMFVVIPEWLADSRTQFGDD-RY 224
Query: 228 NSTVCCSIAYFEKNTTNSNIFLDVIQGTGWMERTILFYGVYTDQIYTYYVNSLYHTKLFY 287
N T + ++ V G+ + ++LFYG Y+ + + + + Y
Sbjct: 225 NKTKAIKVMP-PAVRARADELSTVWDFGGYFQYSLLFYGFYSKETF-------FGETIKY 276
Query: 288 NMPMAYILVPISWTLLSLIAIV-KTAARGFKQKLIESEGQFYKYCNLVFGGWDFCIHNDR 346
+P+AY I SL I+ K AA + L + Q Y + F GWD+ I N
Sbjct: 277 RVPVAYFFCNIFILGFSLFIILRKMAANNRRGTLSSGKTQQYLFNWKAFTGWDYTIGNPE 336
Query: 347 SARIKHQALYNEIKGCIEEERIK 369
+A + A + + I +++ K
Sbjct: 337 TAGNVYMANVIKFREAINDDKQK 359
Score = 44.4 bits (100), Expect = 2e-04
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 526 CWETYVGQQFYKLILTDFAVQFVTTFLINLPRAFMARHTR-------SRCLKMFGEQEFY 578
CWET +GQ+ KL+ D + + FLI+ R R+ R +G EF
Sbjct: 594 CWETIIGQEITKLVTMDLYMTVASIFLIDFLRGLACRYLNLYWPWDLERTFPEYG--EFK 651
Query: 579 LPKHVLDIVYVQTIIWMAMF 598
+ ++VL +V Q +IW+ +F
Sbjct: 652 VAENVLHLVNNQGMIWLGLF 671
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 33.5 bits (73), Expect = 0.44
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 15/147 (10%)
Query: 35 QELFDNLQRADAAKLATLLPSKQARNTTTVKRARSQTDRRQST-FARTMQSRDIHLSMLP 93
+EL DNLQ A+ A+L R T + +S++DR S + R L +
Sbjct: 1546 EELEDNLQIAEDARL---------RLEVTNQALKSESDRAISNKDVEAEEKRRGLLKQIR 1596
Query: 94 DLSENLSNEERSWE-EIMQIKALPVPMSQKIELKARLQNATKLRLQGFEQLHLRQRKVWH 152
DL L NE+R + K + +Q EL+ +L+ A +L+ + +QL + +++
Sbjct: 1597 DLENELENEKRGKSGAVSHRKKIE---NQIGELEQQLEVANRLKEEYNKQLK-KNQQIIK 1652
Query: 153 RFRIGCTETFSKLELWQTPMREIEGKF 179
++I C E E +RE + KF
Sbjct: 1653 EYQIECEEARQAKEDIAALLREADRKF 1679
>Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical
protein M01A8.2b protein.
Length = 869
Score = 29.9 bits (64), Expect = 5.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 346 RSARIKHQALYNEIKGCIEEERIKEEKQSRSRES 379
+ A KHQ + ++K IE E+ K +K+ +SR S
Sbjct: 298 QKAPSKHQLMMEQLKASIEAEKTKPKKEIKSRVS 331
>Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical
protein M01A8.2a protein.
Length = 937
Score = 29.9 bits (64), Expect = 5.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 346 RSARIKHQALYNEIKGCIEEERIKEEKQSRSRES 379
+ A KHQ + ++K IE E+ K +K+ +SR S
Sbjct: 366 QKAPSKHQLMMEQLKASIEAEKTKPKKEIKSRVS 399
>AC006777-6|AAK72307.1| 517|Caenorhabditis elegans Hypothetical
protein Y46H3D.4 protein.
Length = 517
Score = 29.9 bits (64), Expect = 5.5
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 327 FYKYCNLVFGGWDFCIHNDRSARIKHQALYNEIKGC 362
FY Y N + G +FC DR A + +YN K C
Sbjct: 138 FYAYNNTILDGTEFC---DRYADLALMFVYNNFKNC 170
>Z82268-6|CAB05194.1| 163|Caenorhabditis elegans Hypothetical
protein F52B11.5 protein.
Length = 163
Score = 29.1 bits (62), Expect = 9.6
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 342 IHNDRSARIKHQALYNEIKGCIEEERIKEEKQSRSRESQILM 383
+HND + + +H N++ +EE +K+E + E QIL+
Sbjct: 21 VHNDVTLKNEHDVA-NDVMRYLEENYVKKENNVKLEEIQILL 61
>Z50742-1|CAA90614.2| 605|Caenorhabditis elegans Hypothetical
protein K09A11.1 protein.
Length = 605
Score = 29.1 bits (62), Expect = 9.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 97 ENLSNEERSWEEIMQIKALPVPMSQKIELKARLQNATKLR 136
E + + R++EEI P P SQK++ A +Q K R
Sbjct: 454 ETMDYKNRTFEEISSELCGPAPKSQKLDFDAYIQEKIKSR 493
>AL021466-1|CAA16282.1| 308|Caenorhabditis elegans Hypothetical
protein VF36H2L.1 protein.
Length = 308
Score = 29.1 bits (62), Expect = 9.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 330 YCNLVFGGWDFCIHNDRSARIKHQALYNEIKGCIEEERIKEEKQS 374
YCN++ GG N I +++ IEE +++ ++QS
Sbjct: 246 YCNVIMGGTISSFVNGIGQSITDAVTLKQVRTLIEERKLRTQRQS 290
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.137 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,533,715
Number of Sequences: 27539
Number of extensions: 532303
Number of successful extensions: 1833
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1826
Number of HSP's gapped (non-prelim): 10
length of query: 612
length of database: 12,573,161
effective HSP length: 86
effective length of query: 526
effective length of database: 10,204,807
effective search space: 5367728482
effective search space used: 5367728482
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)
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